View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9287_low_7 (Length: 561)

Name: NF9287_low_7
Description: NF9287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9287_low_7
NF9287_low_7
[»] chr3 (22 HSPs)
chr3 (13-540)||(5484350-5484875)
chr3 (13-258)||(5525676-5525919)
chr3 (13-198)||(5828158-5828344)
chr3 (13-200)||(5502897-5503082)
chr3 (16-200)||(5490083-5490266)
chr3 (13-198)||(5454907-5455092)
chr3 (13-196)||(20343528-20343712)
chr3 (29-200)||(5446346-5446517)
chr3 (29-176)||(5854204-5854351)
chr3 (13-129)||(5848887-5849003)
chr3 (383-539)||(5854413-5854569)
chr3 (392-539)||(5849227-5849374)
chr3 (388-540)||(5828430-5828582)
chr3 (383-540)||(5445987-5446144)
chr3 (372-536)||(20343226-20343390)
chr3 (388-538)||(5502591-5502741)
chr3 (17-130)||(5802494-5802607)
chr3 (388-540)||(5454569-5454721)
chr3 (366-540)||(5489764-5489938)
chr3 (400-539)||(5802840-5802979)
chr3 (378-540)||(5525407-5525557)
chr3 (252-316)||(5525588-5525652)
[»] chr6 (2 HSPs)
chr6 (29-200)||(25809295-25809466)
chr6 (383-540)||(25809668-25809825)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Complemental strand, 5484875 - 5484350
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| |||||||||||||||||||||    
T  5484875 cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct 5484776  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||    
T  5484775 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggt 5484678  T
Q  213 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484677 actgataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaa 5484578  T
Q  313 acataaaattacgcggcattaataattctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactac 412  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  5484577 acataaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctac 5484478  T
Q  413 agatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatccgttcttgtaatggtcacatca 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5484477 agatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatccgttcttgtaatggtcatatca 5484378  T
Q  513 gcatatagaaagaagcatggtaagccaa 540  Q
    |||||||| |||||||||||||||||||    
T  5484377 gcatataggaagaagcatggtaagccaa 5484350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 5525919 - 5525676
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  ||||||||    
T  5525919 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct 5525820  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggt 212  Q
    ||||||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| ||||||||||||||||||||||||||||     
T  5525819 tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggc 5525722  T
Q  213 actgataccttaactgtttaattaataggaaaagattacaaaacat 258  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5525721 actgctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 5828158 - 5828344
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5828158 cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct 5828257  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 198  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828258 tccgaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 5503082 - 5502897
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||    
T  5503082 cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct 5502983  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 200  Q
    ||||| |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502982 tcagagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 5490266 - 5490083
Alignment:
Q  16 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 115  Q
    |||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5490266 agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5490167  T
Q  116 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 200  Q
    ||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490166 gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 5455092 - 5454907
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    |||||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||    
T  5455092 cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct 5454993  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 198  Q
    |||||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454992 tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 20343712 - 20343528
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| ||||||    
T  20343712 cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct 20343613  T
Q  113 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 196  Q
    |||||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343612 tcagaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 200
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  29 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 128  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  129 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 200  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 5854204 - 5854351
Alignment:
Q  29 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 128  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  129 tcatttccaaagacatattttatctcttcagtcagatatattgcacaa 176  Q
     ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854304 acatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 5848887 - 5849003
Alignment:
Q  13 cagagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 112  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||    
T  5848887 cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct 5848986  T
Q  113 tcagaacttggtatttt 129  Q
    |||||||| ||||||||    
T  5848987 tcagaactcggtatttt 5849003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 383 - 539
Target Start/End: Original strand, 5854413 - 5854569
Alignment:
Q  383 gcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataata 482  Q
    |||| |||||| ||||||| ||||| |  ||||||||| |||||||| ||| |||||||||| || | |||||||||||||||||||| |||| || |||    
T  5854413 gcttgttgactaacatttatttcaatcctcagatcataaaaagaataagaggaacttgaagcatgctgggactgttgcaggagttattacatttattata 5854512  T
Q  483 ggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagcca 539  Q
    ||||||  |||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  5854513 ggactaatcgttcttgtattggtcacatcagcatataaaaagaagcttggtaagcca 5854569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 392 - 539
Target Start/End: Original strand, 5849227 - 5849374
Alignment:
Q  392 ctgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatcc 491  Q
    |||||||||| ||||| |  ||||||||| |||||||| | ||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||| ||    
T  5849227 ctgacatttatttcaaccctcagatcataaaaagaataagcgaaacttgaagcgtgcttggactgttgcaggagtcattgcgttcataataggactaacc 5849326  T
Q  492 gttcttgtaatggtcacatcagcatatagaaagaagcatggtaagcca 539  Q
    ||||||||| |||| ||||||||||||||| ||||   ||||||||||    
T  5849327 gttcttgtattggttacatcagcatatagagagaaaattggtaagcca 5849374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 388 - 540
Target Start/End: Original strand, 5828430 - 5828582
Alignment:
Q  388 ttgactgacatttacttcaaactacagatcatataaagaata-cgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggac 486  Q
    |||||||||||||||||||| |  ||||||||| |||||||| ||||||  ||||||| |||| ||||| |||||||||||||||||||||| || ||||    
T  5828430 ttgactgacatttacttcaaccctcagatcataaaaagaataacgagaag-ttgaagcttgttgggactcttgcaggagttattgcattcattattggac 5828528  T
Q  487 tatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    ||  |||||| ||| ||| ||||||||||||||||||||||| |||||||||||    
T  5828529 taatcgttctggtattggccacatcagcatatagaaagaagcttggtaagccaa 5828582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 540
Target Start/End: Complemental strand, 5446144 - 5445987
Alignment:
Q  383 gcttcttgactgacatttacttcaaactacagatcatataaagaatacg-agaaacttgaagcgtgttcggactgttgcaggagttattgcattcataat 481  Q
    |||| |||||||||||| ||||||| |  ||||||||| |||||||| | ||||| ||||||| || | ||||| ||||||||||| |||||||||| ||    
T  5446144 gcttgttgactgacattaacttcaaccctcagatcataaaaagaataagcagaaa-ttgaagcttgctgggactcttgcaggagttgttgcattcattat 5446046  T
Q  482 aggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    |||||||  |||||||||| ||||||||||||  ||||||||||||| |||||||||||    
T  5446045 aggactaaacgttcttgtattggtcacatcagtgtatagaaagaagcttggtaagccaa 5445987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 372 - 536
Target Start/End: Complemental strand, 20343390 - 20343226
Alignment:
Q  372 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattg 471  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| |||||||||| |  | ||| | |||| || |||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttgaagctttctgggatttttgccggggttattg 20343291  T
Q  472 cattcataataggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaag 536  Q
    |||| || ||||||||| ||||||| ||| ||||||| ||||||||||||||||||| |||||||    
T  20343290 catttattataggactagccgttctcgtattggtcacgtcagcatatagaaagaagcttggtaag 20343226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 388 - 538
Target Start/End: Complemental strand, 5502741 - 5502591
Alignment:
Q  388 ttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggact 487  Q
    |||||||||||| | ||||| |  ||||||||| |||||||| | | || ||||||| || | ||||| ||||||||||| |||||||||| ||||||||    
T  5502741 ttgactgacattaatttcaaccctcagatcataaaaagaataagcggaaattgaagcttgctgggactcttgcaggagttgttgcattcattataggact 5502642  T
Q  488 atccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagcc 538  Q
    | ||||||| ||| || ||||||||| |||||||||||||| |||||||||    
T  5502641 aaccgttctcgtattgatcacatcagtatatagaaagaagcttggtaagcc 5502591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  17 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 116  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  117 aacttggtattttc 130  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 388 - 540
Target Start/End: Complemental strand, 5454721 - 5454569
Alignment:
Q  388 ttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggact 487  Q
    |||||||||||| ||||||| |  ||||||||| |||||||| |   || ||||||| || | ||||| |||||||||||||||||||||  ||||||||    
T  5454721 ttgactgacattaacttcaaccctcagatcataaaaagaataagcagaagttgaagcttgctgggactcttgcaggagttattgcattcactataggact 5454622  T
Q  488 atccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    |   ||||||||| |||||||||||||||||| |||||||  |||||||||||    
T  5454621 aatagttcttgtattggtcacatcagcatataaaaagaagattggtaagccaa 5454569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 366 - 540
Target Start/End: Complemental strand, 5489938 - 5489764
Alignment:
Q  366 tttttccttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggag 465  Q
    ||||| ||||| || || ||| |||||||||||| ||||||| |  ||||||||| | |||||| | | || ||||||| || | ||||| |||||||||    
T  5489938 ttttttcttctataccttcttgttgactgacattaacttcaaccctcagatcataaagagaataagcggaaattgaagcttgctgggactcttgcaggag 5489839  T
Q  466 ttattgcattcataataggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    ||||||||||||| |||| ||||  |||||| ||  || |||||||| ||||||||||||||| |||||||||||    
T  5489838 ttattgcattcattatagtactaagcgttctcgttttgatcacatcaacatatagaaagaagcttggtaagccaa 5489764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 539
Target Start/End: Original strand, 5802840 - 5802979
Alignment:
Q  400 tacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattcataataggactatccgttcttgt 499  Q
    |||||||| || ||||||||| |||||||| ||| || |||||||||||  ||||| |||||||||||   |||||| | ||   | || ||||||||||    
T  5802840 tacttcaaccttcagatcataaaaagaataagaggaatttgaagcgtgtcgggactcttgcaggagtttcggcattcgttatgctattaaccgttcttgt 5802939  T
Q  500 aatggtcacatcagcatatagaaagaagcatggtaagcca 539  Q
      ||||||||||||||| ||||||||||| ||||||||||    
T  5802940 tttggtcacatcagcatctagaaagaagcttggtaagcca 5802979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 378 - 540
Target Start/End: Complemental strand, 5525557 - 5525407
Alignment:
Q  378 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttgaagcgtgttcggactgttgcaggagttattgcattca 477  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| |||| ||||| || | ||||||| ||||||            |    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaactcgaagcttgctgggactgtcgcagga------------a 5525470  T
Q  478 taataggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    | |||||||||   |||||| || |||||||||||| |||||||||||||| |||||||||||    
T  5525469 ttataggactaattgttcttatattggtcacatcagtatatagaaagaagcttggtaagccaa 5525407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  252 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 316  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  29 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 128  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  129 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 200  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 540
Target Start/End: Original strand, 25809668 - 25809825
Alignment:
Q  383 gcttcttgactgacatttacttcaaactacagatcatataaagaatacg-agaaacttgaagcgtgttcggactgttgcaggagttattgcattcataat 481  Q
    |||| |||||||||||| ||||||| |  ||||||||| |||||||| | ||||| ||||||| || | ||||| ||||||||||| |||||||||| ||    
T  25809668 gcttgttgactgacattaacttcaaccctcagatcataaaaagaataagcagaaa-ttgaagcttgctgggactcttgcaggagttgttgcattcattat 25809766  T
Q  482 aggactatccgttcttgtaatggtcacatcagcatatagaaagaagcatggtaagccaa 540  Q
    |||||||  |||||||||| ||||||||||||  ||||||||||||| |||||||||||    
T  25809767 aggactaaacgttcttgtattggtcacatcagtgtatagaaagaagcttggtaagccaa 25809825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University