View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_high_4 (Length: 527)
Name: NF9288A_high_4
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 321 - 510
Target Start/End: Complemental strand, 39781149 - 39780958
Alignment:
| Q |
321 |
agtgttaatttgatgggtttgaattgaaaagttatataaaataacatattcataaattttttgctattagctatagctatttataatattagaggtttag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39781149 |
agtgttaatttgatgggtttgaattgaaaagttatataaaataacatattcataaaatttttgctattagctatagctatttataatattagaggtttag |
39781050 |
T |
|
| Q |
421 |
ggagttc--agacnnnnnnnnnnggaaattcttaagcttgttaagcatatcgtttgtggattttatgtattcagttattcggttgtctgttg |
510 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39781049 |
ggagttcagagaaaaaaaaaaaaggaaattcttaagcttgttaagcatatcgtttgtggattttatgtattcagttattcggttgtctgttg |
39780958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 39781436 - 39781337
Alignment:
| Q |
27 |
agaacctgtgtgcagattttgtaattaccatatagtctttcaaatcgggtcacatgagagcaacccagtgcgatgacatggttgactaatatagtggaac |
126 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39781436 |
agaacatgtttgcagattttgtaattaccatatagtctttcaaatcgggtcacatgagagcaacccagtgcgatgacatggttgactaatatagtggaac |
39781337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University