View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_high_5 (Length: 512)
Name: NF9288A_high_5
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 21378509 - 21379026
Alignment:
| Q |
1 |
ctcagtgtcaaccttgtgatcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaatatttcatgtacttcttc |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378509 |
ctcagtgtcaaccttgtgctcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaatatttcatgtacttcttc |
21378608 |
T |
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| Q |
101 |
agattgcactcaactcatttcatccacaggtgaataaattactatatagtta--------------------ttatgtataaaaatcaataccatttaaa |
180 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21378609 |
agattgcactcaactcatttcatccacaggtaaataaattactatatagttacttgttttgttaaattactattatgtataaaaatcaataccatttaaa |
21378708 |
T |
|
| Q |
181 |
cnnnnnnn-tgttttcattttgttttataggaatggatcctccaacatgttatccattatcaaaagcatgtaaatatggtatggtttatggcgacggatc |
279 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
21378709 |
caaaaaaaatgttttcattttgttttataggaatggatcctccaacatgttatccattaacaaaagcatgtaaatatggtatggtttatggtgacggatc |
21378808 |
T |
|
| Q |
280 |
cttctccgaaggatacttcagccgtgaacgactaaccataacaccaacagacgcaattgatggtttatttctcggatgtgggcaaaacaaccaaggtctg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
21378809 |
cttctccgaaggatacttcagccgtgaacgactaacagtaacaccaacagacgcaattgatggtttctttctcggatgtggggaaaacaaccaaggtctg |
21378908 |
T |
|
| Q |
380 |
ttcggcatgtctgccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaaaatacaacaaaattttctcttattgtcttc |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21378909 |
ttcggcatgtctgccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaaaatacaacaaaattttctcttattgtcttc |
21379008 |
T |
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| Q |
480 |
cttctacttctagcgttg |
497 |
Q |
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|||||||||| ||||||| |
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| T |
21379009 |
cttctacttccagcgttg |
21379026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21404978 - 21405089
Alignment:
| Q |
1 |
ctcagtgtcaaccttgtgatcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaatatttcatgtacttcttc |
100 |
Q |
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|||| ||||||||||||| | || ||||||||| || ||||||||||||| ||||||| |||||||||||||||||| ||||||| |||| |||||||| |
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| T |
21404978 |
ctcaatgtcaaccttgtgttggttcttgttacaagcaacaagatgaaatttatgatccaacaaagtctacttcttattacaatattacatgcacttcttc |
21405077 |
T |
|
| Q |
101 |
agattgcactca |
112 |
Q |
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|||||||||||| |
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| T |
21405078 |
agattgcactca |
21405089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 16225143 - 16225079
Alignment:
| Q |
20 |
tcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaata |
84 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16225143 |
tcgttcttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaata |
16225079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 494
Target Start/End: Original strand, 21405576 - 21405678
Alignment:
| Q |
392 |
gccggcatattaggccttggtcgtcatccaatctcttttgtccaacaaaccgctaaaaaatacaacaaaattttctcttattgtcttccttctacttcta |
491 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |||| |||||| ||||||||||| || || |||| |
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| T |
21405576 |
gccggcctattaggccttggtcgtcatccaatctctttcgtccaacaaacatctcaaaaataccaaaaaactttctcgtattgtcttccctccacatcta |
21405675 |
T |
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| Q |
492 |
gcg |
494 |
Q |
| |
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||| |
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|
| T |
21405676 |
gcg |
21405678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 26171533 - 26171606
Alignment:
| Q |
20 |
tcgtccttgttacacacagcaagatgaaatttttgatccatcaaagtctacttcttattgcaatatttcatgtac |
94 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26171533 |
tcgttcttgttacacacagcaagatgaaatttttgatccatcaaagtctactt-ttattgcaatatttcatgtac |
26171606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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