View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_high_6 (Length: 487)

Name: NF9288A_high_6
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_high_6
NF9288A_high_6
[»] chr2 (21 HSPs)
chr2 (23-476)||(44614347-44614800)
chr2 (247-459)||(44623510-44623722)
chr2 (23-260)||(44623751-44623991)
chr2 (134-244)||(39458954-39459064)
chr2 (110-216)||(39473637-39473743)
chr2 (387-476)||(39601862-39601951)
chr2 (108-244)||(39137521-39137657)
chr2 (280-350)||(39422491-39422561)
chr2 (155-244)||(39152307-39152396)
chr2 (98-216)||(39415040-39415158)
chr2 (113-244)||(39487723-39487854)
chr2 (280-350)||(39136281-39136351)
chr2 (110-216)||(39422018-39422124)
chr2 (389-476)||(39214733-39214820)
chr2 (284-350)||(39458209-39458275)
chr2 (282-346)||(39129487-39129551)
chr2 (280-350)||(39151898-39151968)
chr2 (391-445)||(39160992-39161046)
chr2 (391-445)||(39208148-39208202)
chr2 (100-142)||(39215415-39215457)
chr2 (280-350)||(39488192-39488262)
[»] chr8 (3 HSPs)
chr8 (151-260)||(40347398-40347507)
chr8 (109-375)||(44951213-44951476)
chr8 (247-366)||(40347250-40347369)
[»] chr7 (2 HSPs)
chr7 (108-244)||(19807471-19807607)
chr7 (280-350)||(19806642-19806712)
[»] chr5 (1 HSPs)
chr5 (308-348)||(17058843-17058883)


Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 23 - 476
Target Start/End: Complemental strand, 44614800 - 44614347
Alignment:
Q  23 ttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcct 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614800 ttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaacattttcactcgacctttaaattcctcct 44614701  T
Q  123 cttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614700 cttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtc 44614601  T
Q  223 cttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctcttt 322  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614600 ctccaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctcttt 44614501  T
Q  323 atagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatat 422  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  44614500 atagaccgcaattgcctctcttctactttttgtccattgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatat 44614401  T
Q  423 cagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 476  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44614400 cagctgatttgcctgaccttttatttatattcaacgaaggaatatcatcttcat 44614347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 247 - 459
Target Start/End: Complemental strand, 44623722 - 44623510
Alignment:
Q  247 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 346  Q
    |||||||| ||||| ||||||||| | ||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44623722 cttttcagtctcaaattccttaacttgggtctccatattttctagctcttcgcagcacttctcaatatctctctttatagaccgcaatcgcctctcttct 44623623  T
Q  347 actttttgtccattgcattcctcaaatgannnnnnnaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttat 446  Q
    |||| |||||| ||||||||| | |||||       ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||||| ||||||    
T  44623622 acttgttgtccgttgcattccgcgaatgatttttttaacgatgcaagttctttcctcagcatggaaaatgaattatcagctgattttcctggctttttat 44623523  T
Q  447 ttatattcaacga 459  Q
    |||| ||||||||    
T  44623522 ttatgttcaacga 44623510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 23 - 260
Target Start/End: Complemental strand, 44623991 - 44623751
Alignment:
Q  23 ttgagattgtcctcagtttggttttcaatttgctgcatttttccttcaaattcctctacctttgtttcaaa---cattttcactcgacctttaaattcct 119  Q
    |||||||||||||||  ||| ||||||| ||||||||||||| |||| |||| |||| |||||| ||||||    | ||||||| || ||||||||||||    
T  44623991 ttgagattgtcctcaacttgattttcaaattgctgcatttttacttcgaatttctcttcctttgcttcaaaaagtactttcacttgaactttaaattcct 44623892  T
Q  120 cctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaa 219  Q
    | |||| ||| ||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||||    
T  44623891 cttcttttgattggaactccatcactcttatttcgaattccttttcttttgattcaaactccttttgtcgtctctcgaaattcgttttttctgattcaaa 44623792  T
Q  220 gtccttcaccaggccttcaaattcacccttttcagactcaa 260  Q
    |||| |||  |||||||| ||||||||||||| ||| ||||    
T  44623791 gtccctcaataggccttccaattcaccctttttagattcaa 44623751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 39459064 - 39458954
Alignment:
Q  134 aactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggc 233  Q
    ||||||||||||  || |||||||| ||||||||||||||| |  |||||  | | ||||||||||||||||||||||||||| || ||||||||| |||    
T  39459064 aactccttcacttgtccttcaaattgcttttcttttgattcgagctccttcagcctgctctcgaaatgcttcttttctgattccaactccttcacccggc 39458965  T
Q  234 cttcaaattca 244  Q
    |||||||||||    
T  39458964 cttcaaattca 39458954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 39473637 - 39473743
Alignment:
Q  110 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 209  Q
    |||||||||||||||| |||||||||||||||||||  ||  | ||||| ||||||||||||||| |  |||||  || |||||||||||||||||||||    
T  39473637 ttaaattcctcctcttttgactggaactccttcacttgtccattaaatttcttttcttttgattcgagctccttcagttggctctcgaaatgcttctttt 39473736  T
Q  210 ctgattc 216  Q
    |||||||    
T  39473737 ctgattc 39473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 476
Target Start/End: Complemental strand, 39601951 - 39601862
Alignment:
Q  387 atgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 476  Q
    |||||||  ||||| ||||||||||||||||  |||||| |||||||| |||||||||| ||| || |||| ||||||||||||||||||    
T  39601951 atgcaaggcctttcttcagcgaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatcttcat 39601862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 39137657 - 39137521
Alignment:
Q  108 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 207  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || |||||  | ||| ||||||||||| |||||||||||    
T  39137657 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcaagctgcttctgtcggctctcaaaatgcttctt 39137558  T
Q  208 ttctgattcaaagtccttcaccaggccttcaaattca 244  Q
    ||| ||||| |  |||||||||  |||||||||||||    
T  39137557 ttcagattcgagttccttcaccctgccttcaaattca 39137521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 39422491 - 39422561
Alignment:
Q  280 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||  | ||||||||||||    
T  39422491 cttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctactt 39422561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 39152396 - 39152307
Alignment:
Q  155 aattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattca 244  Q
    |||||||||||  ||||||| |  |||||  ||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  39152396 aattccttttccattgattcgagctccttcagtcggctctcgaaatgcttcttttctgattccagcttcttcacctggccttcaaattca 39152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 39415040 - 39415158
Alignment:
Q  98 ttcactcgacctttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcg 196  Q
    |||||| | ||||| | ||||||||||| |||||||||||| |||| || |||||| || ||  ||||||||||||||||  |||||  || |||| |||    
T  39415040 ttcacttgtcctttgagttcctcctcttttgactggaactctttcattcgttctttgaa-ttgattttcttttgattcaagctccttcagttggctttcg 39415138  T
Q  197 aaatgcttcttttctgattc 216  Q
    ||||||||||||||||||||    
T  39415139 aaatgcttcttttctgattc 39415158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 39487723 - 39487854
Alignment:
Q  113 aattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctg 212  Q
    ||||||||||||| ||||||||||||||||| |  |  ||||  || |||||||| || ||| |  ||||| |||||||||||  ||||||||||||| |    
T  39487723 aattcctcctcttttgactggaactccttcatttgttcttcatgttgcttttcttgtgcttcgagctccttctgtcggctctcagaatgcttcttttcag 39487822  T
Q  213 attcaaagtccttcaccaggccttcaaattca 244  Q
    ||||    ||||||||| ||||||||||||||    
T  39487823 attcgggctccttcacccggccttcaaattca 39487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 39136351 - 39136281
Alignment:
Q  280 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  39136351 cttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctactt 39136281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 39422018 - 39422124
Alignment:
Q  110 ttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctttt 209  Q
    |||||||||||||||| |||| |||||||||||| |  ||  || |||| ||||||| ||||||| |  |||||  ||||||| || |||||||||||||    
T  39422018 ttaaattcctcctcttttgacaggaactccttcatttgtccatcgaatttcttttctattgattcgagatccttcagtcggctttcaaaatgcttctttt 39422117  T
Q  210 ctgattc 216  Q
    |||||||    
T  39422118 ctgattc 39422124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 389 - 476
Target Start/End: Complemental strand, 39214820 - 39214733
Alignment:
Q  389 gcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggccttttatttatattcaacgaaggaatatcatcttcat 476  Q
    ||||| |||||| ||||||||||||||||  |||  | ||||||||||||||||||| ||| || | || || |||||||||||||||    
T  39214820 gcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatcttcat 39214733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 39458275 - 39458209
Alignment:
Q  284 ttttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||| || ||||||||||| | |||||||||||||||||| ||| |||||| | ||||||||||||    
T  39458275 ttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctactt 39458209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 39129551 - 39129487
Alignment:
Q  282 tattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 346  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||| |||||| | ||||||||    
T  39129551 tattttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttct 39129487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 39151968 - 39151898
Alignment:
Q  280 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||||||| ||||||||| ||| || |||||||| ||||||||| ||| ||| || | ||||||||||||    
T  39151968 cttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctactt 39151898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Complemental strand, 39161046 - 39160992
Alignment:
Q  391 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 445  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39161046 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39160992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 445
Target Start/End: Original strand, 39208148 - 39208202
Alignment:
Q  391 aagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctggcctttta 445  Q
    |||||||||| ||||||||||||||||   |||||||||||||| |||| |||||    
T  39208148 aagttctttcatcagcgaggaaaatgattcatcagctgatttgcttggcttttta 39208202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 142
Target Start/End: Complemental strand, 39215457 - 39215415
Alignment:
Q  100 cactcgacctttaaattcctcctcttctgactggaactccttc 142  Q
    |||| |||||||||||||||||| || ||||||||||||||||    
T  39215457 cacttgacctttaaattcctcctgttttgactggaactccttc 39215415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 350
Target Start/End: Original strand, 39488192 - 39488262
Alignment:
Q  280 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||||||| ||||||||  |||| | ||||| |||||||||||||||| ||| || || |||||||||||    
T  39488192 cttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctactt 39488262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 40347507 - 40347398
Alignment:
Q  151 ttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttcttttctgattcaaagtccttcaccaggccttcaaattcacccttt 250  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||| |   |||||||||||||||||||||| ||| | ||||||||||||||||    
T  40347507 ttcaaactccttttcttttgattcaaactccttttgtcggctctcgaaattcaatttttctgattcaaagtccttcatcagccattcaaattcacccttt 40347408  T
Q  251 tcagactcaa 260  Q
    | ||| ||||    
T  40347407 ttagattcaa 40347398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 109 - 375
Target Start/End: Original strand, 44951213 - 44951476
Alignment:
Q  109 tttaaattcctcctcttctgactggaactccttcactc-ttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 207  Q
    ||||||||||||||||| |||||| ||||||||| ||  |||||| || ||  |||||| |||||||||| |||||   |||| ||||||||||    ||    
T  44951213 tttaaattcctcctcttttgactgaaactccttctcttgttctttgaattta-ttttctcttgattcaaactccttcattcggatctcgaaatgtgcttt 44951311  T
Q  208 ttctgattcaaagtccttcaccaggccttcaaattcacccttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttc 307  Q
    ||| |||||||| ||||| ||  ||||   || |  |  ||||| |||||||||||| ||||| | ||||||||||||||| ||||||| |||||| |||    
T  44951312 ttcagattcaaactcctttactcggccaataagtatattctttttagactcaagttcattaacttgggtctccttattttcaagctcttcgcagcacttc 44951411  T
Q  308 tcaatatctctctttatagaccgcaatcgcctctcttctactttttgtccattgcattcctcaaatga 375  Q
    | ||||||||||||||| | ||||||| |||||||||||||   ||| || |||||||||||||||||    
T  44951412 ttaatatctctctttatcggccgcaattgcctctcttctac---ttgcccgttgcattcctcaaatga 44951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 366
Target Start/End: Complemental strand, 40347369 - 40347250
Alignment:
Q  247 cttttcagactcaagttccttaacctcggtctccttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttct 346  Q
    ||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| || ||||||| | || |||| || ||||||||||||||| ||| |    
T  40347369 cttttcagattcaagtttcttaacttgggtctccatattttctagctctttgcaacacttctcaacagctttcttaatggaccgcaatcgcctcactttt 40347270  T
Q  347 actttttgtccattgcattc 366  Q
    |||| ||||| |||||||||    
T  40347269 acttgttgtctattgcattc 40347250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 19807607 - 19807471
Alignment:
Q  108 ctttaaattcctcctcttctgactggaactccttcactcttctttcaaattccttttcttttgattcaaattccttttgtcggctctcgaaatgcttctt 207  Q
    |||| |||||||| |||| ||||||||||||||||| |  |  |||| ||| |||||||| || ||| |    ||| |||||||||||||||||||||||    
T  19807607 ctttgaattcctcttcttttgactggaactccttcatttgttcttcatattgcttttcttgtgtttcgagccgcttctgtcggctctcgaaatgcttctt 19807508  T
Q  208 ttctgattcaaagtccttcaccaggccttcaaattca 244  Q
    ||| ||||| |  |||||| || ||||||||||||||    
T  19807507 ttcagattcgagctccttcgcccggccttcaaattca 19807471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 19806712 - 19806642
Alignment:
Q  280 cttattttctagctctttgcagcatttctcaatatctctctttatagaccgcaatcgcctctcttctactt 350  Q
    ||||||||| || |||| |||||| | |||||||||||||||||| ||| |||||| ||||||||||||||    
T  19806712 cttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctactt 19806642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 17058883 - 17058843
Alignment:
Q  308 tcaatatctctctttatagaccgcaatcgcctctcttctac 348  Q
    ||||||||||||||||||||| |||||||| | ||||||||    
T  17058883 tcaatatctctctttatagactgcaatcgcttttcttctac 17058843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University