View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_100 (Length: 357)
Name: NF9288A_low_100
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_100 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 45282306 - 45282648
Alignment:
| Q |
10 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatagcaacccaccaaagcagacatatctcctac |
109 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
45282306 |
agacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttg |
45282405 |
T |
|
| Q |
110 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282406 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
45282505 |
T |
|
| Q |
210 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282506 |
gataatcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
45282605 |
T |
|
| Q |
310 |
tgaattttgagagtgatgccaccttttctcatatactgtttct |
352 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
45282606 |
tgaattttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 45274063 - 45274405
Alignment:
| Q |
10 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatagcaacccaccaaagcagacatatctcctac |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45274063 |
agacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctac |
45274162 |
T |
|
| Q |
110 |
gtttctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatg |
209 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
45274163 |
gtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatg |
45274262 |
T |
|
| Q |
210 |
gataatcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| |||||||||||||||||||| |
|
|
| T |
45274263 |
gataatcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaa |
45274362 |
T |
|
| Q |
310 |
tgaattttgagagtgatgccaccttttctcatatactgtttct |
352 |
Q |
| |
|
| ||||||||||||||||| || |||||| ||||||| ||||| |
|
|
| T |
45274363 |
taaattttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 45293653 - 45293904
Alignment:
| Q |
17 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatagcaacccaccaaagcagacatatctcctacgtttcta |
116 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45293653 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45293752 |
T |
|
| Q |
117 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
216 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
45293753 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45293852 |
T |
|
| Q |
217 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
265 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45293853 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 45302613 - 45302864
Alignment:
| Q |
17 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatagcaacccaccaaagcagacatatctcctacgtttcta |
116 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45302613 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45302712 |
T |
|
| Q |
117 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
216 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
|
|
| T |
45302713 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45302812 |
T |
|
| Q |
217 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
265 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
|
|
| T |
45302813 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 45270547 - 45270852
Alignment:
| Q |
21 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatagcaacccaccaaagcagacatatctcctacgtttctaaatg |
120 |
Q |
| |
|
||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
121 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
220 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
221 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
319 |
Q |
| |
|
||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
|
| Q |
320 |
gagtgatgc |
328 |
Q |
| |
|
||||||||| |
|
|
| T |
45270844 |
gagtgatgc |
45270852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 45293957 - 45294008
Alignment:
| Q |
276 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatg |
327 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatg |
45294008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 45302917 - 45302968
Alignment:
| Q |
276 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatg |
327 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatg |
45302968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University