View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_103 (Length: 355)
Name: NF9288A_low_103
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_103 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
| [»] scaffold0338 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 45341219 - 45341489
Alignment:
| Q |
14 |
aaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacctgcacgtc |
113 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45341219 |
aaatctcatacataaataaaaaacaattc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacttgcacgtc |
45341316 |
T |
|
| Q |
114 |
atctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45341317 |
gtctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcatt |
45341416 |
T |
|
| Q |
214 |
caaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaatattatcttaa |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45341417 |
caaggatttcaagtatcacatatacacatgttcatcatcccataatactaacatcatgtgaatattatcttaa |
45341489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
| Q |
142 |
cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata |
237 |
Q |
| |
|
|||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| |||||||||||||||||| |||| || ||| |
|
|
| T |
4548267 |
cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata |
4548364 |
T |
|
| Q |
238 |
cacatgttcattatcccataatactaacatcatgtgaatattatc |
282 |
Q |
| |
|
||||| ||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4548365 |
tacatgctcaatatcctataatactgacatcatgtgaatattatc |
4548409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 284
Target Start/End: Complemental strand, 6011586 - 6011416
Alignment:
| Q |
113 |
catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat |
212 |
Q |
| |
|
|||||||||||||| || |||||| || |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| ||| |
|
|
| T |
6011586 |
catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat |
6011488 |
T |
|
| Q |
213 |
tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatctt |
284 |
Q |
| |
|
|| | || |||| ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| |
|
|
| T |
6011487 |
tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatctt |
6011416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
| Q |
221 |
ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt |
284 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||| | |||||||||||||| | ||||||||||| |
|
|
| T |
11622506 |
ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt |
11622442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
| Q |
141 |
acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat |
229 |
Q |
| |
|
||||||||||||||||| | | || |||| ||| |||| || |||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
19432474 |
acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat |
19432388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 19800545 - 19800749
Alignment:
| Q |
77 |
agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt |
176 |
Q |
| |
|
|||||| ||||||||| | |||||||||||||||||| | ||||||||| ||||||||||||| | ||||||||||| |||| || |||| | ||| | |
|
|
| T |
19800545 |
agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat |
19800643 |
T |
|
| Q |
177 |
atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat |
276 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| |||| |
|
|
| T |
19800644 |
attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat |
19800743 |
T |
|
| Q |
277 |
attatc |
282 |
Q |
| |
|
|||||| |
|
|
| T |
19800744 |
attatc |
19800749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 14258964 - 14259023
Alignment:
| Q |
10 |
tctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa |
70 |
Q |
| |
|
||||||||||||||||||| || |||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
14258964 |
tctcaaatctcatacataa-tagacaacaagtctcatcaataatataaatacataacataa |
14259023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
| Q |
77 |
agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt |
176 |
Q |
| |
|
||||||||||| ||| | |||||||||| |||||||| || |||||||||||| |||||| | ||||||||||| |||||||| || ||| ||| | |
|
|
| T |
16019136 |
agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat |
16019038 |
T |
|
| Q |
177 |
atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta |
228 |
Q |
| |
|
||| || ||||||||| || || | ||||||||||||||||||||||||| |
|
|
| T |
16019037 |
attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta |
16018989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
| Q |
166 |
ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa |
225 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||| ||||||| |||||||| |
|
|
| T |
25387088 |
ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa |
25387029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 77 - 279
Target Start/End: Complemental strand, 24820160 - 24819961
Alignment:
| Q |
77 |
agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt |
176 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| | | ||| |||| ||| | |
|
|
| T |
24820160 |
agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat |
24820063 |
T |
|
| Q |
177 |
atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat |
276 |
Q |
| |
|
||| |||||| ||||||| || || | |||||| ||||||||||||||| |||||||||| ||||| |||| |||| | |||||||||||| | ||||| |
|
|
| T |
24820062 |
attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat |
24819964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata |
174 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| |||||| | ||||||||||||| |||| ||| ||||| ||| |
|
|
| T |
15061971 |
caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata |
15062069 |
T |
|
| Q |
175 |
gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat |
229 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| || ||||||||||||||||| |
|
|
| T |
15062070 |
atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat |
15062124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 15662954 - 15662812
Alignment:
| Q |
142 |
cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca |
241 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
15662954 |
cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca |
15662856 |
T |
|
| Q |
242 |
tgttcatta-tcccataatactaacatcatgtgaatattatctt |
284 |
Q |
| |
|
|| ||| || ||| | |||||||||||| | ||||||||||||| |
|
|
| T |
15662855 |
tgctcaatattcctagaatactaacatcgtatgaatattatctt |
15662812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 221
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
| Q |
79 |
cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat |
178 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||||||||||| ||| |||||| | |||| || |||||||||| ||| ||||| ||| ||| |
|
|
| T |
16723492 |
cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat |
16723589 |
T |
|
| Q |
179 |
ttcacataataaaatataatcaaagaaatagcattcaaggatt |
221 |
Q |
| |
|
|||| || |||||||| |||||||| ||||| |||||| |||| |
|
|
| T |
16723590 |
ttcatatgataaaataaaatcaaagtaatagaattcaatgatt |
16723632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
| Q |
131 |
aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc |
230 |
Q |
| |
|
|||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| | |||||||| ||| |
|
|
| T |
15550892 |
aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc |
15550794 |
T |
|
| Q |
231 |
acatatacacatgttcat |
248 |
Q |
| |
|
||||||| ||||| |||| |
|
|
| T |
15550793 |
acatatatacatgctcat |
15550776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 15061828 - 15061884
Alignment:
| Q |
10 |
tctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagc |
66 |
Q |
| |
|
|||||||| ||| ||||||||| ||| |||||||| |||||| ||||||||||||| |
|
|
| T |
15061828 |
tctcaaatttcagacataaatagacagcaagtctcatcaataaaataaatacatagc |
15061884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 77 - 243
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
| Q |
77 |
agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt |
176 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||||||||||| || |||| | || | ||||||||||||||| || | |||| ||| | |
|
|
| T |
16673597 |
agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat |
16673498 |
T |
|
| Q |
177 |
atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg |
243 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
16673497 |
attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg |
16673431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 284
Target Start/End: Original strand, 18448904 - 18449073
Alignment:
| Q |
115 |
tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc |
214 |
Q |
| |
|
|||||||||||| || |||||| || |||||||| ||||||||| | ||||||| ||| || ||||||||| || ||||| || | || ||||||| |
|
|
| T |
18448904 |
tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataata-ttcacataaaaacgtataagcacaaaagtagcatta |
18449002 |
T |
|
| Q |
215 |
aaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt |
284 |
Q |
| |
|
|| |||||||||||||||||| ||||| || || || | |||||||||||||||||||||||||||| |
|
|
| T |
18449003 |
tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatctt |
18449073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 16673733 - 16673668
Alignment:
| Q |
10 |
tctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataagtccc |
75 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| | ||||||| ||||||||| | |||||||||| |
|
|
| T |
16673733 |
tctcaaatcttagacataaataaacaacaagttttagcaataacataaatacacaacataagtccc |
16673668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 41806068 - 41806127
Alignment:
| Q |
10 |
tctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa |
70 |
Q |
| |
|
|||||||||||| |||||| || | |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
41806068 |
tctcaaatctcagacataa-tagataacaagtctcggcagtaatataaatgcatagcataa |
41806127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
| Q |
142 |
cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa |
191 |
Q |
| |
|
|||||||||||||||||| || ||||||| ||| |||||||||||||||| |
|
|
| T |
13933031 |
cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa |
13933079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 75 - 282
Target Start/End: Complemental strand, 71437 - 71234
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata |
174 |
Q |
| |
|
||||||||||||||||||| ||||| | | ||||| | |||||| |||||||| |||||| | |||||||||||||||||| |||||| ||| ||| |
|
|
| T |
71437 |
caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata |
71339 |
T |
|
| Q |
175 |
gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga |
274 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| || |
|
|
| T |
71338 |
atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga |
71242 |
T |
|
| Q |
275 |
atattatc |
282 |
Q |
| |
|
|||||||| |
|
|
| T |
71241 |
atattatc |
71234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 286
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
| Q |
80 |
actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt |
179 |
Q |
| |
|
|||||||| ||||| | ||||| | |||||||| ||||||||||| ||| |||||| | ||||||||||||| |||| |||||| ||| ||| ||| |
|
|
| T |
24339 |
actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt |
24241 |
T |
|
| Q |
180 |
tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat |
278 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||||||||||| || ||| |||| ||||| | ||| | |||||||||||||||||||||| |
|
|
| T |
24240 |
tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat |
24142 |
T |
|
| Q |
279 |
tatcttaa |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
24141 |
tatcttaa |
24134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:
Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 75 - 228
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata |
174 |
Q |
| |
|
|||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| |||||| | ||||||||||||||||||| ||| |||||| ||| |
|
|
| T |
18696 |
caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata |
18598 |
T |
|
| Q |
175 |
gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta |
228 |
Q |
| |
|
|||| |||||||||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
18597 |
atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta |
18545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 75 - 242
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata |
174 |
Q |
| |
|
|||||||| | |||||||| |||||||| | ||||| | ||||||||||||||| |||||| | || ||||||||| ||||| | |||||||| ||| |
|
|
| T |
26058031 |
caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata |
26058129 |
T |
|
| Q |
175 |
gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat |
242 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | |||||||| |
|
|
| T |
26058130 |
atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat |
26058196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
| Q |
115 |
tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc |
214 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||| |||| || | ||||| ||| | ||||||||| || |||||| || |||||||||||| |
|
|
| T |
19079696 |
tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta |
19079598 |
T |
|
| Q |
215 |
aaggatttcaagta |
228 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
19079597 |
taggatttaaagta |
19079584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 284
Target Start/End: Complemental strand, 13123323 - 13123114
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata |
174 |
Q |
| |
|
||||||||||||||||||| ||| |||| |||||| | ||||||||||| ||| |||||| || ||| ||| ||||||| || ||| |||||| || |
|
|
| T |
13123323 |
caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt |
13123225 |
T |
|
| Q |
175 |
gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt |
272 |
Q |
| |
|
|| ||||| ||||||||||||||| ||| ||||||||||||| |||||||| || ||| || ||||| |||| | || | ||||||||||| |||| |
|
|
| T |
13123224 |
ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt |
13123126 |
T |
|
| Q |
273 |
gaatattatctt |
284 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13123125 |
gaatattatctt |
13123114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 286
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
| Q |
80 |
actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt |
179 |
Q |
| |
|
|||||||||||||| ||||| || | | || ||| ||||||||||| ||| |||||| | |||||||| ||||||||| | ||||||| || |||| |
|
|
| T |
12331940 |
actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt |
12331843 |
T |
|
| Q |
180 |
tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat |
278 |
Q |
| |
|
||||||||||||||||| || | |||||| |||| ||||||| ||||| || ||| |||| ||||| | ||| | |||||||||||||| ||||||| |
|
|
| T |
12331842 |
ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat |
12331745 |
T |
|
| Q |
279 |
tatcttaa |
286 |
Q |
| |
|
|||||||| |
|
|
| T |
12331744 |
tatcttaa |
12331737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
| Q |
77 |
agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt |
176 |
Q |
| |
|
||||||||||| ||||| ||| |||||| |||| | ||||||||||||| | ||||| | | |||| ||||||||||||| || |||| | ||| | |
|
|
| T |
23846286 |
agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat |
23846187 |
T |
|
| Q |
177 |
atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt |
227 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| |||||| ||||||||||| |
|
|
| T |
23846186 |
atttcacatgataaaatataaacata-aaataacattcatggatttcaagt |
23846137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
| Q |
80 |
actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca |
159 |
Q |
| |
|
|||||||||||||| ||| |||| | |||||| | ||||||||||| ||| |||||| | |||||||||||||||||| |
|
|
| T |
20891709 |
actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca |
20891788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
| Q |
115 |
tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc |
214 |
Q |
| |
|
||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | |||||||| |
|
|
| T |
28579771 |
tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt |
28579673 |
T |
|
| Q |
215 |
aaggatttcaagtatcacatatacacatgttcat |
248 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||| |
|
|
| T |
28579672 |
tagga-ttcaaatatcacatatatacatgctcat |
28579640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
| Q |
75 |
caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata |
129 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||| | ||| ||||||||||| |
|
|
| T |
16592351 |
caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata |
16592297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4111543 - 4111503
Alignment:
| Q |
1 |
aacaacatgtctcaaatctcatacataaataaacaacaagt |
41 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||||| |
|
|
| T |
4111543 |
aacaacatgtctcaaatctcataaatatatcaacaacaagt |
4111503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
| Q |
143 |
ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa |
225 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || ||||||||||||||| |
|
|
| T |
11379 |
ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa |
11300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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