View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_106 (Length: 352)

Name: NF9288A_low_106
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_106
NF9288A_low_106
[»] chr4 (10 HSPs)
chr4 (199-352)||(37180001-37180154)
chr4 (199-352)||(37181583-37181736)
chr4 (199-352)||(37189700-37189853)
chr4 (203-352)||(37187684-37187833)
chr4 (40-136)||(37180220-37180316)
chr4 (40-136)||(37189538-37189634)
chr4 (203-251)||(38704220-38704268)
chr4 (64-136)||(37181445-37181517)
chr4 (48-135)||(37187901-37187988)
chr4 (64-136)||(38704293-38704369)
[»] chr5 (2 HSPs)
chr5 (221-339)||(27096701-27096816)
chr5 (221-339)||(27103004-27103119)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 199 - 352
Target Start/End: Complemental strand, 37180154 - 37180001
Alignment:
Q  199 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180154 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37180055  T
Q  299 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37180054 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 37180001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 37181583 - 37181736
Alignment:
Q  199 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181583 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37181682  T
Q  299 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181683 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 37181736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 37189700 - 37189853
Alignment:
Q  199 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189700 tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct 37189799  T
Q  299 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37189800 acaaatattccaacaattccatctctcaacattccaccattgccagcagtcact 37189853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 203 - 352
Target Start/End: Complemental strand, 37187833 - 37187684
Alignment:
Q  203 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa 302  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  37187833 ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa 37187734  T
Q  303 atattccaacaattccatctctcaacattccaccattgccagcagtcact 352  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  37187733 attttccaacaattccatctctcaacattccaccattgccagcagccact 37187684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
Q  40 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37180316 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37180220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
Q  40 catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 136  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37189538 catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg 37189634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
Q  203 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704268 ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta 38704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
Q  64 caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 136  Q
    ||||||||||||  ||||||||||||| ||||| ||||| |||| |||||||||||||||||| |||||||||    
T  37181445 caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg 37181517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
Q  48 tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt 135  Q
    |||||||||||  |  |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| ||||||||    
T  37187988 tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt 37187901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
Q  64 caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg 136  Q
    ||||||||| ||||||||||    ||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||    
T  38704369 caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg 38704293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 27096701 - 27096816
Alignment:
Q  221 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 320  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||  ||||||| ||   ||||||| ||||||    
T  27096701 cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat 27096797  T
Q  321 ctctcaacattccaccatt 339  Q
    |||||||| ||||||||||    
T  27096798 ctctcaactttccaccatt 27096816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 27103004 - 27103119
Alignment:
Q  221 cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat 320  Q
    |||||||| ||| |||||||||||||||| ||||||||  ||||||| |||||||||||||||||||| ||  |||| || ||   ||||||| ||||||    
T  27103004 cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaa---tccaacacttccat 27103100  T
Q  321 ctctcaacattccaccatt 339  Q
    |||||||| ||||||||||    
T  27103101 ctctcaactttccaccatt 27103119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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