View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_110 (Length: 351)
Name: NF9288A_low_110
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_110 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 3602196 - 3602539
Alignment:
| Q |
7 |
ggtttcactttgccattttccaaataaggttgcaatttctctaacacagctccatctgaagtgagtaagaaagggatagctggtggagttccaggtggta |
106 |
Q |
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| T |
3602196 |
ggtttcactttgccattttccaaataaggttgcaatttctctaatacagctccatctgaagtgagtaagaaagggatagctggtggagttccaggtggta |
3602295 |
T |
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| Q |
107 |
gtattgtcacaacttttcctccttcattggcagccttcactgccctctcactatcacctatttttgga----ataaaaaatattaaataggttcttaact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
3602296 |
gtattgtcacaacttttcctccttcattggcagccttcactgccctctcactatcacctattttaggaatatataaaaaatattaaataggttcttaact |
3602395 |
T |
|
| Q |
203 |
atattg-tttcttacaatgaaaacttacacataatacaata---tattaataagggttcaaatttagtacaaatatcttacctactgcatcatacaccac |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3602396 |
atattgttttcttacaatgaaaacttacacataatacaatatattattaataagggttcaaatttactacaaatatcttacctactgcatcatacaccac |
3602495 |
T |
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| Q |
299 |
atcaaacttttcagtaagttcttcataattctccttagaataat |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3602496 |
atcaaacttttcagtaagttcttcataattctccttagtataat |
3602539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 3598043 - 3598371
Alignment:
| Q |
11 |
tcactttgccattttccaaataaggttgcaatttctctaacacagctccatctgaagtgagtaagaaagggatagctggtggagttccaggtggtagtat |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598043 |
tcactctgccattttccaaataaggttgcaatttctctaacactgctccatctgaagtgagtaagaaagggatagctggtggagttccaggtggtagtat |
3598142 |
T |
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| Q |
111 |
tgtcacaacttttcctccttcattggcagccttcactgccctctcactatcacctatttttgga----ataaaaaatattaaataggttcttaactatat |
206 |
Q |
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| T |
3598143 |
tgtcacaacttttcctccttcattggcagccttcactgccctctcactatcacctatttttggaatatataaaaaatattaaataggttcttaactatat |
3598242 |
T |
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| Q |
207 |
tg-tttcttacaatgaaaacttacacataatacaatatattaataagggttcaaatttagtacaaatatcttacctactgcatcatacaccacatcaaac |
305 |
Q |
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|| ||||||||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3598243 |
tgttttcttacaatgaaaacttacacattatacaacatattaataaaaattcaaatttaatacaaatatcttacctactgcatcatacaccacatcaaac |
3598342 |
T |
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| Q |
306 |
ttttcagtaagttcttcataattctcctt |
334 |
Q |
| |
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|||||||||| |||||||||||||||||| |
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| T |
3598343 |
ttttcagtaatttcttcataattctcctt |
3598371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 3594814 - 3595146
Alignment:
| Q |
7 |
ggtttcactttgccattttccaaataaggttgcaatttctctaacacagctccatctgaagtgagtaagaaagggatagctggtggagttccaggtggta |
106 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3594814 |
ggtttcactttgccattttccaagtaaggtttcaatttctctaacacagctccatctgaagtgagtgcaaaagggatagctggtggagttccaggtggta |
3594913 |
T |
|
| Q |
107 |
gtattgtcacaacttttcctccttcattggcagccttcactgccctctcactatcacctatttttgga----ataaaaaatattaaataggttcttaact |
202 |
Q |
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||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |||||| |
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| T |
3594914 |
gtattgtcaaaaattttcctccttcatttacagccttcagtgccctctcactatcacctatttttggaatatataaaaaatatttaataggtttttaact |
3595013 |
T |
|
| Q |
203 |
atattgtttct-tacaatgaaaacttacacataatacaatatattaataagggttcaaatttagtacaaatatcttacctactgcatcatacaccacatc |
301 |
Q |
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||||||||| | |||||||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3595014 |
atattgtttttatacaatgaaaacttacacattatacaacatattaataaaaattcaaatttaatacaaatatcttacctactgcatcatacaccacatc |
3595113 |
T |
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| Q |
302 |
aaacttttcagtaagttcttcataattctcctt |
334 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
3595114 |
aaacttttcagtaatttcttcataattctcctt |
3595146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 3583665 - 3583585
Alignment:
| Q |
7 |
ggtttcactttgccattttccaaataaggttgcaatttctctaacacagctccatctgaagtgagtaagaaagggatagct |
87 |
Q |
| |
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||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
3583665 |
ggtttcagtttgccattttccaagtaaggtttcaatttctctaacactgctccatctgaagtgagtaagaaagtgatagct |
3583585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 12877079 - 12877018
Alignment:
| Q |
273 |
atcttacctactgcatcatacaccacatcaaacttttcagtaagttcttcataattctcctt |
334 |
Q |
| |
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||||||||||||| |||| |||||||||||||||| |||| || |||||| |||||||||| |
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| T |
12877079 |
atcttacctactgtatcaaacaccacatcaaacttctcaggcaggtcttcaaaattctcctt |
12877018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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