View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_112 (Length: 348)
Name: NF9288A_low_112
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_112 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 28 - 344
Target Start/End: Complemental strand, 26017327 - 26017009
Alignment:
| Q |
28 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttgcacatgcatccattttgtaaatcccattaaccataaattcaataagaccttt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26017327 |
gcctgtaccaatcacaaacaaaaatcttagactatatattggtccttacacatgtatccattttgtaaatcccattaaccataaatttaataagaccttt |
26017228 |
T |
|
| Q |
128 |
ccaaatttgtttaataaatctatatagtatnnnnnnnnnnnnnnn--gatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017227 |
ccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaacaaatccatgcaacccatgaagttacctgtttagattgtccatgaag |
26017128 |
T |
|
| Q |
226 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26017127 |
atcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgct |
26017028 |
T |
|
| Q |
326 |
gccgacggagatggtactg |
344 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
26017027 |
gccgaccgagatggtactg |
26017009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 196 - 324
Target Start/End: Complemental strand, 26002114 - 26001986
Alignment:
| Q |
196 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
295 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
|
|
| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
|
| Q |
296 |
tctccttctacctcaacaacatccttcgc |
324 |
Q |
| |
|
||||| || |||||||||||||||||||| |
|
|
| T |
26002014 |
tctccctccacctcaacaacatccttcgc |
26001986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 30373307 - 30373225
Alignment:
| Q |
242 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacatccttcgc |
324 |
Q |
| |
|
|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||||| |||| |
|
|
| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacatccctcgc |
30373225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University