View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_12 (Length: 512)
Name: NF9288A_low_12
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 198 - 422
Target Start/End: Original strand, 31133807 - 31134027
Alignment:
| Q |
198 |
gagattacattctccaatccactatttacttacgagttacatacatgattccttaatcattccttgtcttccttcttctatttcgtgaaaacaaaacttg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31133807 |
gagattacattctccaatccactatttacttatgagttaca----tgattccttaatcattccttgtcttccttcttctatttcgtgaaaacaaaagttg |
31133902 |
T |
|
| Q |
298 |
gcttattccacaccactgtgagtttagaaaacaaaaacatttgctgaatgcctctcctctcagttccatccaccaccaaaaccctaaattctccatcccc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31133903 |
gcttattccacaccactgtgagtttagaaaacaaaaacatttgctgaatgcctctcctctcagttccatccaccaccaaaaccctaaattctccatcccc |
31134002 |
T |
|
| Q |
398 |
tttctatcaccaccatgccactttc |
422 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31134003 |
tttctatcaccaccatgccactttc |
31134027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 31133640 - 31133700
Alignment:
| Q |
23 |
atattgcaaacaggaaatcaaacacac-ctacgctatgaaagaaatagacaacaaacaaac |
82 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
31133640 |
atattgcaaacaggaaatcaaacacacactgcgctatgaaacaaatagacaacaaacaaac |
31133700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University