View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_120 (Length: 344)
Name: NF9288A_low_120
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_120 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 37181187 - 37181507
Alignment:
| Q |
20 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
119 |
Q |
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| T |
37181187 |
catcacattggactattttggggttataactaatgtaggcaaccaaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaag |
37181286 |
T |
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| Q |
120 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcatcaaatccaaaaccaaattct |
219 |
Q |
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| T |
37181287 |
ctcttatagttctccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctttccttctcatcaaatccaaaagcaaattct |
37181386 |
T |
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| Q |
220 |
ctctatacaaacaaatacagtccttagctcctacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaa |
319 |
Q |
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| T |
37181387 |
ctctat----acaaatacagtccttagctcctacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaa |
37181482 |
T |
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| Q |
320 |
tgtcaagcatgagcatagaagctcg |
344 |
Q |
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| T |
37181483 |
tgtcaagcatgagcctagaagctcg |
37181507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 69 - 344
Target Start/End: Complemental strand, 37180512 - 37180230
Alignment:
| Q |
69 |
cttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctctt-atagttct-ccaaacaactctccttcaaatctctctcactcta |
166 |
Q |
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| T |
37180512 |
cttttgtcaaagtgaaacccaataagttgaactaactaaaaattgcaaaagctcttgatggttcttccgaactaccctccttcaaatctatctcaatcta |
37180413 |
T |
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| Q |
167 |
tataagaccatccactacccctttccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctcctacaat------tcat |
260 |
Q |
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| T |
37180412 |
tataagaccacccactatccctatgcttctcatcaaatcccaaatcaaattctctctatacaaa-atatactctccttagctcctacaattattcctcat |
37180314 |
T |
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| Q |
261 |
caagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcg |
344 |
Q |
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| T |
37180313 |
caaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcg |
37180230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 344
Target Start/End: Complemental strand, 37188197 - 37187910
Alignment:
| Q |
65 |
aatgcttttgtcaaagtgaaacacaggaagttgaactaacttaa--------aattgcaaaagctctta-tagttctccaaacaactctccttcaaatct |
155 |
Q |
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| T |
37188197 |
aatgattttgtcaaagtgaaacagaggaagttaaacaaactaaagaaataaaaattgcaaaagctcgtagttgttctccaaactaccctccttcaaatct |
37188098 |
T |
|
| Q |
156 |
ctctcactctatata--agaccatccactacccctttccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctccta- |
252 |
Q |
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| T |
37188097 |
tgcttactctatatataagaccatccactactcctttccttctcataaaatctcaaagcaaattctctatatacaaa----tatactgcttagctcctat |
37188002 |
T |
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| Q |
253 |
caattcatcaagttatcaatggcctcaaccaaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcg |
344 |
Q |
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| T |
37188001 |
caattcataaggttatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcg |
37187910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 92 - 344
Target Start/End: Original strand, 37189365 - 37189624
Alignment:
| Q |
92 |
aagttgaactaacttaaaattgcaaaagctctt-atagttc-tccaaacaactctccttcaaatctctctcactctatataagaccatccactacccctt |
189 |
Q |
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|||||||||||||| |||||||||||||||||| || |||| ||| ||| || ||||||||||||||||||| ||||||||||| || |||||| |||| |
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| T |
37189365 |
aagttgaactaactaaaaattgcaaaagctcttgatggttcatccgaactaccctccttcaaatctctctcaatctatataagatcacccactatcccta |
37189464 |
T |
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| Q |
190 |
tccttctcatcaaatccaaaaccaaattctctctatacaaacaaatacagtccttagctcctacaat------tcatcaagttatcaatggcctcaacca |
283 |
Q |
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| T |
37189465 |
tgcttctcatcaaatcccaaatcaaattctctctatacaaa-atataccctccttaggtcctacaattattcatcatcaaactatcaatggcaatattca |
37189563 |
T |
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| Q |
284 |
aatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcatagaagctcg |
344 |
Q |
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| T |
37189564 |
aatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcg |
37189624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 210
Target Start/End: Complemental strand, 38704569 - 38704423
Alignment:
| Q |
64 |
aaatgcttttgtcaaagtgaaacacaggaagttgaactaacttaaaattgcaaaagctcttatagttctccaaacaactctccttcaaatctctctcact |
163 |
Q |
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||||| |||||| ||||| ||||||||||||||||| |||||||| |||||||| ||| |||| |||||||| | || | ||||||||||| ||| |
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| T |
38704569 |
aaatggttttgtgaaagtaaaacacaggaagttgaagtaacttaagattgcaaatgcttttattattctccaagctaccttgattcaaatctcttctact |
38704470 |
T |
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| Q |
164 |
ctatataagaccatccactacccctttccttctcatcaaatccaaaa |
210 |
Q |
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|||||||| ||||||||||| |||||| ||| |||| |||||||||| |
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| T |
38704469 |
ctatataaaaccatccactatccctttgcttttcataaaatccaaaa |
38704423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 344
Target Start/End: Complemental strand, 38704405 - 38704303
Alignment:
| Q |
240 |
tccttagctcctacaattcatcaagttatcaatggcctcaaccaaatccttcattgcaactt----tacttcttgttgtcacaatgtcaagcatgagcat |
335 |
Q |
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| T |
38704405 |
tccttagctcctaaaattcatcaa------aatggcatcaagcaaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacct |
38704312 |
T |
|
| Q |
336 |
agaagctcg |
344 |
Q |
| |
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||||||||| |
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| T |
38704311 |
agaagctcg |
38704303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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