View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_122 (Length: 342)
Name: NF9288A_low_122
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_122 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 5198052 - 5198193
Alignment:
| Q |
22 |
tcacgtcctttctggttcatcaacacccaccacaacatgtttcaccgttcacgcaaagatctatatcacctcacgttgttgagcaaatgagacaatctaa |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198052 |
tcacgtcctttctggttcatcaacagccaccacaacatgtttcaccgttcacgcaaagatctatatcacctcacgttgttgagcaaatgagacaatctaa |
5198151 |
T |
|
| Q |
122 |
tggtcctaaaaatcacaactcaatttagtcagattctaccaa |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198152 |
tggtcctaaaaatcacaactcaatttagtcagattctaccaa |
5198193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 5198196 - 5198298
Alignment:
| Q |
221 |
tatcgatcattggaagataataaagaactgcaaataagcaaatccaatggttcatcaaagagaatgaatgaggatgaacttcctttggttccagtggcac |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5198196 |
tatcgatcattggaagataataaagaactgcaaataagcaaatccaatggttcatcaaagagaatgaatgaggatgaacttcctttagttccagtggcac |
5198295 |
T |
|
| Q |
321 |
tga |
323 |
Q |
| |
|
||| |
|
|
| T |
5198296 |
tga |
5198298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 312
Target Start/End: Original strand, 5058837 - 5058991
Alignment:
| Q |
158 |
taccaaaattcatctaacatttccactcggataagccaagtaatctcaagaaatttttcaccttatcgatcattggaagataataaagaactgcaaataa |
257 |
Q |
| |
|
||||||| | |||||||||| ||||||| |||||| || ||||| ||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |
|
|
| T |
5058837 |
taccaaagtccatctaacatgtccactcagataagtcatgtaatggcaagaaatttttcaccttaccaatcattggaagataataaagaactacaaataa |
5058936 |
T |
|
| Q |
258 |
gcaaatccaatggttcatcaaagagaatgaatgaggatgaacttcctttggttcc |
312 |
Q |
| |
|
| | | | ||| || |||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
5058937 |
gtatagctaatagtccatccaagagaatgaaaagagatgaacttcctttgtttcc |
5058991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 5178414 - 5178372
Alignment:
| Q |
99 |
gttgagcaaatgagacaatctaatggtcctaaaaatcacaact |
141 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
5178414 |
gttgagcaaatgaaacaatctaattgtcctaaaaatcacaact |
5178372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 1795549 - 1795597
Alignment:
| Q |
220 |
ttatcgatcattggaagataataaagaactgcaaataagcaaatccaat |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
1795549 |
ttatcaatcattggaagataataaagaactacaaataagtaaagccaat |
1795597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 5185457 - 5185409
Alignment:
| Q |
220 |
ttatcgatcattggaagataataaagaactgcaaataagcaaatccaat |
268 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
5185457 |
ttatcaatcattggaagataataaagaactacaaataagtaaagccaat |
5185409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 268
Target Start/End: Complemental strand, 6231970 - 6231922
Alignment:
| Q |
220 |
ttatcgatcattggaagataataaagaactgcaaataagcaaatccaat |
268 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||| ||| ||||| |
|
|
| T |
6231970 |
ttatcaatcattggaagataataaataactacaaataagtaaagccaat |
6231922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University