View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_125 (Length: 341)

Name: NF9288A_low_125
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_125
NF9288A_low_125
[»] chr8 (16 HSPs)
chr8 (114-322)||(3430331-3430540)
chr8 (11-105)||(3405819-3405913)
chr8 (11-95)||(3430249-3430335)
chr8 (11-102)||(3365987-3366078)
chr8 (11-106)||(3396867-3396962)
chr8 (11-107)||(3319568-3319664)
chr8 (11-89)||(3389357-3389435)
chr8 (11-105)||(31177689-31177783)
chr8 (11-105)||(13789978-13790072)
chr8 (34-105)||(3283952-3284023)
chr8 (11-105)||(3259791-3259885)
chr8 (49-105)||(3322845-3322901)
chr8 (59-101)||(3377005-3377047)
chr8 (11-100)||(3266488-3266577)
chr8 (50-105)||(13810174-13810229)
chr8 (11-99)||(7163716-7163804)
[»] chr5 (6 HSPs)
chr5 (11-106)||(20813688-20813783)
chr5 (11-106)||(20840127-20840222)
chr5 (11-102)||(15804950-15805041)
chr5 (11-87)||(12597098-12597174)
chr5 (11-87)||(30419705-30419781)
chr5 (49-101)||(12598035-12598087)
[»] chr2 (1 HSPs)
chr2 (11-106)||(14765799-14765894)
[»] chr7 (1 HSPs)
chr7 (11-105)||(8370188-8370282)
[»] scaffold0468 (1 HSPs)
scaffold0468 (12-90)||(3379-3457)
[»] chr3 (2 HSPs)
chr3 (11-105)||(6903973-6904067)
chr3 (59-105)||(32409843-32409889)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 114 - 322
Target Start/End: Original strand, 3430331 - 3430540
Alignment:
Q  114 tattgatgcaaaaatggagttattacaagcagaggaagtgttactatcaccaaatgtaaaaacagtgacatcgcctaaagtggaagtgcaagcatgtcct 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3430331 tattgatgcaaaaatggagttattacaagcagaggaagtgttactatcaccaaatgtaaaaacagtgacatcgcctaaagtggaagtgcaagcatgtcct 3430430  T
Q  214 aatgtgaagatggagccatcacttattgtgaagaagaatgaggcattaccaaagccaaac-nnnnnnnnctttacaagacttgcaatttgcaaagagagt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  3430431 aatgtgaagatggagccatcacttattgtgaagaagaatgaggcattaccaaagccaaacaaaaaaaaactttacaagacttgcaatttgcaaagagagt 3430530  T
Q  313 gggagaatgt 322  Q
    ||||||||||    
T  3430531 gggagaatgt 3430540  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 3405913 - 3405819
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  3405913 gatgaagattgggaaggtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggattgactgctaaggagac 3405819  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 3430249 - 3430335
Alignment:
Q  11 gatgaagattggcaaagtgt--agtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattg 95  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3430249 gatgaagattggcaaagtgtgtagtatcaaatttaggagttggtgacaatgtggagaattttgtagcttttgggcatggatttattg 3430335  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 3365987 - 3366078
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaagga 102  Q
    ||||||||||||||| |  |||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  3365987 gatgaagattggcaaggcatagtgtcaaatttaggagttggtaacaatttggagatttttgtagctattgggcatggatttactgttaagga 3366078  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 3396962 - 3396867
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagacg 106  Q
    |||||||||||| || ||||||| |||||||||  ||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||    
T  3396962 gatgaagattgggaaggtgtagtgtcaaatttaaaagttgatgacaatgtggagatttttgtagctattgggcatggattgactgttaaggagacg 3396867  T

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Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 3319568 - 3319664
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagacga 107  Q
    ||||||||||||||| | || |||||||| |||||||||||||||||| ||||||||||||||| | |||| |||||||  | ||||||||||||||    
T  3319568 gatgaagattggcaaggcgtcgtatcaaaattaggagttggtgacaatttggagatttttgtagttattggacatggatggactgttaaggagacga 3319664  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 3389435 - 3389357
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggat 89  Q
    |||||||||||||||   || |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||    
T  3389435 gatgaagattggcaagacgtggtatcaaaattaggagttggtgacaatgtggagatttttgtatctattgggcatggat 3389357  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 31177689 - 31177783
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||||||| || |||| |  |||||||| || |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  31177689 gatgaagattgggaaggtgttgcctcaaattttggtgttggtgacaatgtggaggtttttgtagctattgggcatggattaactgttaaggagac 31177783  T

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Target: chr8; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 13789978 - 13790072
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||  |||||| ||||||| | || || ||||||||| ||||    
T  13789978 gatgaagattggcaaggtgtagtgtcaaatttaggtgttggtgacaaggtggagataattgtagtttttggggacgggttgattgttaagaagac 13790072  T

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Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 3284023 - 3283952
Alignment:
Q  34 atcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    ||||||| |||||  |||||||||||||||||| |||||||||||||||||||  || ||||||||||||||    
T  3284023 atcaaatctaggacctggtgacaatgtggagatatttgtagcttttgggcatgagttgattgttaaggagac 3283952  T

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Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 3259885 - 3259791
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||||||| | | |||| |||||||| ||||   ||||||| |||| |||||||||||||||||||| |||||||| ||||||||| ||||    
T  3259885 gatgaagattggaagaatgtaatatcaaatctaggtcctggtgacgatgtagagatttttgtagcttttggccatggattgattgttaagcagac 3259791  T

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Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 3322901 - 3322845
Alignment:
Q  49 tggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||||||||||||||||||| | ||||||||| ||||| ||||||||||||||    
T  3322901 tggtgacaatgtggagatttttgttgtttttgggcacggattgattgttaaggagac 3322845  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 3377005 - 3377047
Alignment:
Q  59 gtggagatttttgtagcttttgggcatggatttattgttaagg 101  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  3377005 gtggagatttttgtagcttttgggcgtggattgattgttaagg 3377047  T

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Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 3266577 - 3266488
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaag 100  Q
    |||||||||||| | | ||||  ||||||| |||||  ||||||  ||||| |||||| ||||||||||| ||||||||| |||||||||    
T  3266577 gatgaagattggaagaatgtaacatcaaatctaggacctggtgatgatgtgaagatttatgtagcttttgagcatggattgattgttaag 3266488  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 105
Target Start/End: Original strand, 13810174 - 13810229
Alignment:
Q  50 ggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||| |||||||||||||||  |||||||  |||||| ||||||||||||||    
T  13810174 ggtgacaaagtggagatttttgtactttttgggtgtggattgattgttaaggagac 13810229  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 7163804 - 7163716
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaa 99  Q
    |||||||||||| | | ||||  ||||||| |||||  ||||||  |||| |||||||||||| |||||||| || |||| ||||||||    
T  7163804 gatgaagattggaagaatgtaacatcaaatctaggacctggtgatgatgtagagatttttgtatcttttgggaatagattgattgttaa 7163716  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 20813688 - 20813783
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagacg 106  Q
    |||||||||||| || ||||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  20813688 gatgaagattgggaaggtgtagtgtcaaatttaaaagttggtgacaatgtggagatttttgtagctattgggcatggatttactgttaaggagacg 20813783  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 20840127 - 20840222
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagacg 106  Q
    |||||||||||| || ||||| | |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  20840127 gatgaagattgggaaggtgtattgtcaaatttaaaagttggtgacaatgtggagatttttgtagctattgggcatggatttactgttaaggagacg 20840222  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 15804950 - 15805041
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaagga 102  Q
    ||||||||||||||| |  |||| |||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||| |||||||||    
T  15804950 gatgaagattggcaaggcatagtgtcaaatttaggagttggtaacaatgtggaaatatttgtagctgttgggcatggatttactgttaagga 15805041  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 12597098 - 12597174
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatgg 87  Q
    ||||||||||||||| || || |||||||||| |||||||||||||||||||||||||| |||||| |||| |||||    
T  12597098 gatgaagattggcaaggtttaatatcaaattttggagttggtgacaatgtggagattttcgtagctattggacatgg 12597174  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 30419705 - 30419781
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatgg 87  Q
    ||||||||||||||  |||||  |||||||||||||| |||||||||| ||||||||||||||||||| ||| ||||    
T  30419705 gatgaagattggcagggtgtaaaatcaaatttaggagctggtgacaatatggagatttttgtagctttagggaatgg 30419781  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 12598087 - 12598035
Alignment:
Q  49 tggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaagg 101  Q
    ||||||||  ||||||||||||||||||||||||| |||||| ||||||||||    
T  12598087 tggtgacagcgtggagatttttgtagcttttgggcgtggattgattgttaagg 12598035  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 14765894 - 14765799
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagacg 106  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||  |||||||||||    
T  14765894 gatgaagattggcaaggtgtagcatcaaatttaggagttggtgacaatgttgagatttttgttgcttttgggcacggattgataattaaggagacg 14765799  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 8370282 - 8370188
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| | |||||||| |  |||||||||||    
T  8370282 gatgaagattggcaaggtgtagtatcaaatttaggagttggtgacaatgtggagatttttgttacttttagacatggattgacagttaaggagac 8370188  T

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Target: scaffold0468 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 3457 - 3379
Alignment:
Q  12 atgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatt 90  Q
    ||||||||||||| |||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  3457 atgaagattggcagagtgtaatatcaaatttagcagttggggacaatgtggggatttttgtagcttttgggcatggatt 3379  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 6904067 - 6903973
Alignment:
Q  11 gatgaagattggcaaagtgtagtatcaaatttaggagttggtgacaatgtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||||||||| |||||| |||||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||| | ||||||| ||||    
T  6904067 gatgaagattggcagagtgtaatatcaaatttagcagttggggacagtgtggggatttttgtagcttttgggcatggattgactgttaagaagac 6903973  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 32409889 - 32409843
Alignment:
Q  59 gtggagatttttgtagcttttgggcatggatttattgttaaggagac 105  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  32409889 gtggagatctttgtagcttttgagcatggattgattgttaaggagac 32409843  T

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