View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_128 (Length: 340)
Name: NF9288A_low_128
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_128 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 125 - 334
Target Start/End: Original strand, 22291917 - 22292126
Alignment:
| Q |
125 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaatta |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22291917 |
gaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaatta |
22292016 |
T |
|
| Q |
225 |
gtggatccgattcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
22292017 |
gtggatccgattcaatcaactattaccctgttctcatcagagccccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaa |
22292116 |
T |
|
| Q |
325 |
ttgaagaaac |
334 |
Q |
| |
|
|||||||||| |
|
|
| T |
22292117 |
ttgaagaaac |
22292126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 15434052 - 15434152
Alignment:
| Q |
234 |
attcaatcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaatttacataattaatgaatggaattgaagaaa |
333 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaagaaa |
15434151 |
T |
|
| Q |
334 |
c |
334 |
Q |
| |
|
| |
|
|
| T |
15434152 |
c |
15434152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 53559297 - 53559393
Alignment:
| Q |
104 |
gagaagatgaaagtgaggggtgaaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
53559297 |
gagaagatgaaagtgaggggtgaaactgagattgaaaccgaatggttttcattcatttggctttgatgtgaggggtcaggcttctggtgaattcttg |
53559393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 17682554 - 17682459
Alignment:
| Q |
240 |
tcaactattaccctgttctcatcagagacccaaatgtgattgtgttgtgaatctaattgcaaattta-cataattaatgaatggaattgaagaaac |
334 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||||||| ||| ||||||||||| ||||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatgaatggaattgaagaaac |
17682459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 17682599 - 17682568
Alignment:
| Q |
103 |
agagaagatgaaagtgaggggtgaaactgaga |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17682599 |
agagaagatgaaagtgaggggtgaaactgaga |
17682568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University