View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_13 (Length: 495)

Name: NF9288A_low_13
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_13
NF9288A_low_13
[»] chr3 (15 HSPs)
chr3 (329-489)||(33399827-33399989)
chr3 (136-295)||(32493567-32493717)
chr3 (125-222)||(33399698-33399795)
chr3 (304-372)||(32492827-32492895)
chr3 (422-489)||(32492759-32492828)
chr3 (15-128)||(7841834-7841947)
chr3 (15-128)||(77839-77952)
chr3 (15-128)||(14399684-14399797)
chr3 (15-128)||(21955057-21955170)
chr3 (4-53)||(33399653-33399702)
chr3 (15-128)||(36816335-36816448)
chr3 (12-128)||(6504774-6504890)
chr3 (15-128)||(46992065-46992178)
chr3 (15-128)||(48249686-48249799)
chr3 (17-92)||(4510407-4510482)
[»] chr5 (11 HSPs)
chr5 (10-129)||(20286133-20286252)
chr5 (21-131)||(20287403-20287513)
chr5 (4-133)||(23028374-23028503)
chr5 (15-128)||(18537155-18537268)
chr5 (15-128)||(25895920-25896033)
chr5 (15-128)||(34078909-34079022)
chr5 (23-128)||(4202758-4202863)
chr5 (15-128)||(7799825-7799938)
chr5 (15-128)||(27866664-27866777)
chr5 (15-128)||(1036480-1036593)
chr5 (64-128)||(13566910-13566974)
[»] chr1 (13 HSPs)
chr1 (10-137)||(26466080-26466207)
chr1 (4-130)||(32106460-32106585)
chr1 (15-128)||(13174910-13175023)
chr1 (15-128)||(37016043-37016156)
chr1 (15-128)||(50116582-50116695)
chr1 (15-128)||(21943183-21943296)
chr1 (15-128)||(38691758-38691871)
chr1 (23-137)||(16246561-16246678)
chr1 (15-128)||(12649398-12649511)
chr1 (15-126)||(51663387-51663498)
chr1 (15-128)||(46974293-46974406)
chr1 (22-133)||(25231438-25231549)
chr1 (17-92)||(25593799-25593874)
[»] chr2 (11 HSPs)
chr2 (10-136)||(17996983-17997109)
chr2 (15-128)||(9655285-9655398)
chr2 (15-128)||(1098645-1098758)
chr2 (15-128)||(24750787-24750900)
chr2 (15-128)||(436440-436553)
chr2 (15-128)||(24604908-24605021)
chr2 (15-128)||(28354721-28354834)
chr2 (15-128)||(34920601-34920714)
chr2 (15-128)||(41007799-41007912)
chr2 (15-128)||(43949101-43949214)
chr2 (15-128)||(12907311-12907424)
[»] chr7 (4 HSPs)
chr7 (12-137)||(8400712-8400837)
chr7 (15-128)||(43827425-43827538)
chr7 (17-96)||(16794464-16794543)
chr7 (17-81)||(8194146-8194210)
[»] chr4 (7 HSPs)
chr4 (4-133)||(6182794-6182925)
chr4 (15-137)||(44049739-44049861)
chr4 (15-128)||(4976884-4976997)
chr4 (15-128)||(11502635-11502748)
chr4 (18-130)||(51643315-51643427)
chr4 (15-128)||(38463656-38463769)
chr4 (36-128)||(4769284-4769376)
[»] chr6 (4 HSPs)
chr6 (15-126)||(24220297-24220408)
chr6 (15-128)||(18607125-18607238)
chr6 (15-128)||(29287767-29287880)
chr6 (23-128)||(31147459-31147564)
[»] chr8 (4 HSPs)
chr8 (15-128)||(35965564-35965677)
chr8 (15-128)||(39751847-39751960)
chr8 (15-126)||(45455505-45455616)
chr8 (15-114)||(2145837-2145936)
[»] scaffold0116 (1 HSPs)
scaffold0116 (15-137)||(12391-12514)
[»] scaffold0219 (1 HSPs)
scaffold0219 (15-128)||(17198-17311)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 329 - 489
Target Start/End: Original strand, 33399827 - 33399989
Alignment:
Q  329 aggacagctgattccttccttttgaggtgctataaattgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaga 428  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  33399827 aggacagctgattccttccttttgaggtgctataacttgtccaaattcctatttcctctagtcacccgaatgacatttctcatgcggggagctaacaaat 33399926  T
Q  429 gtggcttcttttcgttgtagtcttcacataaattcttgaaga--atagaaatgaatctcttca 489  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||    
T  33399927 gtggcttcttttcgttgtagtcttcacataaattcttgaagatcatagaaatgaatcttttca 33399989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 136 - 295
Target Start/End: Complemental strand, 32493717 - 32493567
Alignment:
Q  136 gccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccataaattctttctcat 235  Q
    |||||||||||||||||||||||| |||||||||||         |||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  32493717 gccgaaagcgccattattgagatgttgcatttggtg---------ggattagtttccactacctaagtttcgggcaaatcttccataaattctttctcat 32493627  T
Q  236 tcttcctataatttgttgctaatttttgacttgtttgcctaaaatgccttgcagcttgat 295  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32493626 tcttcctataatttggtgctaatttttgacttgtttgcctaaaatgccttgcagcttgat 32493567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 33399698 - 33399795
Alignment:
Q  125 aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399698 aagacggtgttgccgaaagcgccattattgagatgatgcatttggtgtctttagtgggattagtttccactagctaattttcgggcaaatcttccata 33399795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 32492895 - 32492827
Alignment:
Q  304 tggacacaatgctcccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa 372  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32492895 tggacgcaatgcccccccttcccttaggacagctgattccttccttttgaggtgctataaattgtccaa 32492827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 422 - 489
Target Start/End: Complemental strand, 32492828 - 32492759
Alignment:
Q  422 aacaagagtggcttcttttcgttgtagtcttcacata--aattcttgaagaatagaaatgaatctcttca 489  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  32492828 aacaagagtggcttcttttcgttgcagtcttcacatataaattcttgaagaatagaaatgaatctcttca 32492759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 7841947 - 7841834
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| ||||||||||||||| ||||||| ||| ||||    
T  7841947 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacatcaacaaatatggaaggcaaa 7841848  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  7841847 tagaggtgacaaga 7841834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 77952 - 77839
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| ||||| || | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||||||| ||||    
T  77952 ttccaagaaatattttgatacatttgaagaacaaaataccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatgaaaggcaaa 77853  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  77852 tagaggtgacaaga 77839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 14399684 - 14399797
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  14399684 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 14399783  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  14399784 tagaggtgacaaga 14399797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 21955170 - 21955057
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  21955170 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 21955071  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  21955070 tagaggtgacaaga 21955057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 33399653 - 33399702
Alignment:
Q  4 gagtttggtgtttccaaaaaatattttgttaaatttgaagaccaaaagac 53  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33399653 gagtttggtgcttccaaaaaatattttgttaaatttgaagaccaaaagac 33399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 36816448 - 36816335
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  36816448 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 36816349  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  36816348 tagaggtgacaaga 36816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 6504890 - 6504774
Alignment:
Q  12 tgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtc 111  Q
    ||||||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| |    
T  6504890 tgtttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggc 6504791  T
Q  112 aaacagaggtgacaaga 128  Q
    | | |||||||||||||    
T  6504790 acatagaggtgacaaga 6504774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 46992178 - 46992065
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||| ||||| || ||||||||| ||||| || | ||| || ||||||||| ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  46992178 ttccaagaaattttttgatacatttgaagaacaaaataccacattgcatgacaaatatgaagcaagtgtacaatgaacgtcaacaaatatggaagacaaa 46992079  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  46992078 tagaggtgacaaga 46992065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 48249799 - 48249686
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| | |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  48249799 ttccaagaaatattttgatacatttgaaaaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 48249700  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  48249699 tagaggtgacaaga 48249686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 4510407 - 4510482
Alignment:
Q  17 ccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaac 92  Q
    |||||||||||||||  |||||||||||  ||||||||| | |  | |||||||||||||||||| ||||||||||    
T  4510407 ccaaaaaatattttgacaaatttgaagaagaaaagacaagagtctatgacaaatatcaagtaagtctacaatgaac 4510482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 20286133 - 20286252
Alignment:
Q  10 ggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaag 109  Q
    |||| |||||| ||||||||||||||||||||||| |||||||||| ||| || ||||||||||||| |||||||||||||||||||| ||||||| |||    
T  20286133 ggtgcttccaagaaatattttgttaaatttgaagagcaaaagacaagattgcatgacaaatatcaagcaagtatacaatgaacatcaacaaatatggaag 20286232  T
Q  110 tcaaacagaggtgacaagac 129  Q
    ||||||||||||||||||||    
T  20286233 tcaaacagaggtgacaagac 20286252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 20287403 - 20287513
Alignment:
Q  21 aaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagagg 120  Q
    |||||||||||||||||||||||| |||||||||| |||  | ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  20287403 aaaatattttgttaaatttgaagagcaaaagacaagattgtatgacaaatatcaagcaagtatataatgaacgtcaataaatatgaaagtcaaacagagg 20287502  T
Q  121 tgacaagacgg 131  Q
    |||||||||||    
T  20287503 tgacaagacgg 20287513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 23028503 - 23028374
Alignment:
Q  4 gagtttggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaata 103  Q
    ||||||| || || ||||||||||||| |||||||||||||  |||||| || | | || ||||||||||| | ||||||||||||||| | || |||||    
T  23028503 gagtttgatgctttcaaaaaatattttattaaatttgaagagaaaaagaaaagagtgcatgacaaatatcatgcaagtatacaatgaacgtaaaaaaata 23028404  T
Q  104 tgaaagtcaaacagaggtgacaagacggtg 133  Q
    |  |||||||||||||||||||| ||||||    
T  23028403 ttcaagtcaaacagaggtgacaaaacggtg 23028374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 18537268 - 18537155
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  18537268 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 18537169  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  18537168 tagaggtgacaaga 18537155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 25896033 - 25895920
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| | |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  25896033 ttccaagaaatattttgatacatttgaaaaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 25895934  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  25895933 tagaggtgacaaga 25895920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 34078909 - 34079022
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| | |||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  34078909 ttccaagaaatattttgatacatttgaagaaccaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 34079008  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  34079009 tagaggtgacaaga 34079022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 4202863 - 4202758
Alignment:
Q  23 aatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagaggtg 122  Q
    ||||||||| || ||||||||| |||||||| | ||| || || |||| | ||| |||| |||||||||| |||| ||||||| ||| |||| |||||||    
T  4202863 aatattttgatacatttgaagaacaaaagaccacattgcatgataaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaatagaggtg 4202764  T
Q  123 acaaga 128  Q
    ||||||    
T  4202763 acaaga 4202758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 7799938 - 7799825
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| | |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| |||  |||    
T  7799938 ttccaagaaatattttgatacatttgaaaaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggaaaa 7799839  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  7799838 tagaggtgacaaga 7799825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 27866777 - 27866664
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| | |||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| |||  |||    
T  27866777 ttccaagaaatattttgatacatttgaagaaccaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggaaaa 27866678  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  27866677 tagaggtgacaaga 27866664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 1036480 - 1036593
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | |   |||| |||||||||| |||| ||||||| |||  |||    
T  1036480 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgacacaagtgtacaatgaacgtcaacaaatatggaaggaaaa 1036579  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  1036580 tagaggtgacaaga 1036593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 13566974 - 13566910
Alignment:
Q  64 gacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagaggtgacaaga 128  Q
    ||||||| | ||| |||| |||||||||| |||| ||||||| ||| |||| |||||||||||||    
T  13566974 gacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaatagaggtgacaaga 13566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 26466207 - 26466080
Alignment:
Q  10 ggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaag 109  Q
    |||| |||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||||||||||| ||||||||||||||| |||||||||||| |||    
T  26466207 ggtgcttccaagaaatattttgttaaatttgaagaacaaaaaacaagattgcatgacaaatatcaagcaagtatacaatgaacgtcaataaatatggaag 26466108  T
Q  110 tcaaacagaggtgacaagacggtgttgc 137  Q
    ||| |||||||| | || ||||||||||    
T  26466107 tcatacagaggttaaaaaacggtgttgc 26466080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 32106585 - 32106460
Alignment:
Q  4 gagtttggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaata 103  Q
    |||||||||| ||  |||||||| || |||||||||||||| |||||||||| ||| |||||||||||||||| |||||| |||| |||||||| |||||    
T  32106585 gagtttggtgctttgaaaaaatagtt-gttaaatttgaagagcaaaagacaagattgcaagacaaatatcaagcaagtatgcaattaacatcaacaaata 32106487  T
Q  104 tgaaagtcaaacagaggtgacaagacg 130  Q
    || ||||| ||||||||||||||||||    
T  32106486 tggaagtcgaacagaggtgacaagacg 32106460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 13174910 - 13175023
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| ||||||||| ||||| ||||||| ||| ||||    
T  13174910 ttccaataaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaaaatcaacaaatatggaaggcaaa 13175009  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  13175010 tagaggtgacaaga 13175023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 37016043 - 37016156
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  37016043 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 37016142  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  37016143 tagaggtgacaaga 37016156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 50116695 - 50116582
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  50116695 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 50116596  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  50116595 tagaggtgacaaga 50116582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 21943296 - 21943183
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| |||||||||||| |||||||| | ||| || ||||||| ||||  |||| |||||| ||| |||| ||||||| ||| ||||    
T  21943296 ttccaagaaatattttgataaatttgaagaacaaaagaccacattgcatgacaaatgtcaaacaagtgtacaataaacgtcaacaaatatggaaggcaaa 21943197  T
Q  115 cagaggtgacaaga 128  Q
     ||||| |||||||    
T  21943196 tagaggcgacaaga 21943183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 38691871 - 38691758
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| | |||||||| | ||| || ||||||| | ||| |||| ||||||||||||||| ||||||| ||| ||||    
T  38691871 ttccaagaaatattttgatacatttgaataacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacatcaacaaatatggaaggcaaa 38691772  T
Q  115 cagaggtgacaaga 128  Q
     |||| ||||||||    
T  38691771 tagagatgacaaga 38691758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 16246678 - 16246561
Alignment:
Q  23 aatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaat---atgaaagtcaaacagag 119  Q
    ||||||||||||||||||||||  ||||||||| ||| ||  |||||||||||| || ||| |||| ||||||||  |||    | ||| ||||| ||||    
T  16246678 aatattttgttaaatttgaagagaaaaagacaagattgcataacaaatatcaagcaattatgcaatcaacatcaacgaatgaagtcaaactcaaatagag 16246579  T
Q  120 gtgacaagacggtgttgc 137  Q
    ||||||||||||||||||    
T  16246578 gtgacaagacggtgttgc 16246561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 12649511 - 12649398
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| |  ||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  12649511 ttccaagaaatattttgatacatttgaaaaataaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaagacaaa 12649412  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  12649411 tagaggtgacaaga 12649398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 51663387 - 51663498
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||| ||||| |||| ||| ||| ||| ||||    
T  51663387 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacattgaacgtcaacaaaaatggaaggcaaa 51663486  T
Q  115 cagaggtgacaa 126  Q
     |||||||||||    
T  51663487 tagaggtgacaa 51663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 46974293 - 46974406
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || |||| |||| |||||||| | ||| || ||||||| | ||  |||| |||||||||| |||| ||||||| ||| ||||    
T  46974293 ttccaagaaatattttgatacatttaaagaacaaaagaccacattgcatgacaaatgtgaaacaagtgtacaatgaacgtcaacaaatatggaaggcaaa 46974392  T
Q  115 cagaggtgacaaga 128  Q
     | |||||||||||    
T  46974393 taaaggtgacaaga 46974406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 25231438 - 25231549
Alignment:
Q  22 aaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagaggt 121  Q
    ||||||||||||||||||||| |  |||||| || | | || ||||||||||||| ||||||||||  |||   || || |||  |||||||||||||||    
T  25231438 aaatattttgttaaatttgaaaagaaaaagataagagtgcatgacaaatatcaagcaagtatacaactaacggaaaaaattattcaagtcaaacagaggt 25231537  T
Q  122 gacaagacggtg 133  Q
     ||| |||||||    
T  25231538 aacatgacggtg 25231549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 25593799 - 25593874
Alignment:
Q  17 ccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaac 92  Q
    |||||||||||||||  |||||||||||  ||||||||| | | || ||||||||||||  |||| ||||||||||    
T  25593799 ccaaaaaatattttgacaaatttgaagaagaaaagacaagagtccatgacaaatatcaaacaagtctacaatgaac 25593874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17997109 - 17996983
Alignment:
Q  10 ggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaag 109  Q
    |||| |||||| |||||||||| |||||||||||| |||||||||| ||| || | ||||||||||| ||||||||||||||| |||| ||||||| |||    
T  17997109 ggtgcttccaagaaatattttgataaatttgaagagcaaaagacaacattgcatgccaaatatcaagcaagtatacaatgaacgtcaacaaatatggaag 17997010  T
Q  110 tcaaacagaggtgacaagacggtgttg 136  Q
    ||||| ||||||||||||||| |||||    
T  17997009 tcaaatagaggtgacaagacgatgttg 17996983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 9655285 - 9655398
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || || |||| | |||||||| ||||||||||||||| ||||||| ||| ||||    
T  9655285 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgaaaaatgtgaagtaagtgtacaatgaacatcaacaaatatggaaggcaaa 9655384  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  9655385 tagaggtgacaaga 9655398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 1098758 - 1098645
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  1098758 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 1098659  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  1098658 tagaggtgacaaga 1098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 24750787 - 24750900
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  24750787 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 24750886  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  24750887 tagaggtgacaaga 24750900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 436440 - 436553
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| || | |||||||||| |||| ||||||| ||| ||||    
T  436440 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaattgtacaatgaacgtcaacaaatatggaaggcaaa 436539  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  436540 tagaggtgacaaga 436553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 24605021 - 24604908
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||| | ||| ||||    
T  24605021 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatagggaagacaaa 24604922  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  24604921 tagaggtgacaaga 24604908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 28354834 - 28354721
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || |||||||||  ||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||||||||    
T  28354834 ttccaagaaatattttgatacatttgaagaataaaagaccacatttcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaagtcaaa 28354735  T
Q  115 cagaggtgacaaga 128  Q
     | |||||||||||    
T  28354734 tataggtgacaaga 28354721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 34920714 - 34920601
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||  |||| ||||||| ||| ||||    
T  34920714 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaaattcaacaaatatggaaggcaaa 34920615  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  34920614 tagaggtgacaaga 34920601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 41007912 - 41007799
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| || ||||||| |||| ||||||| ||| ||||    
T  41007912 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtctaaaatgaacgtcaacaaatatgtaaggcaaa 41007813  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  41007812 tagaggtgacaaga 41007799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 43949214 - 43949101
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  43949214 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaagacaaa 43949115  T
Q  115 cagaggtgacaaga 128  Q
     | |||||||||||    
T  43949114 tataggtgacaaga 43949101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 12907424 - 12907311
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| ||||||| || || ||||||| | |||||||| | ||| || ||||||| | ||| |||| |||||||||  |||| ||||||| ||| ||||    
T  12907424 ttccaagaaatattctgatacatttgaataacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaaagtcaacaaatatggaaggcaaa 12907325  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  12907324 tagaggtgacaaga 12907311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 8400712 - 8400837
Alignment:
Q  12 tgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtc 111  Q
    |||| ||||||||||||||| |||||||||||| |||||||| | |||  | ||||||||||||| |||| |||| ||||| |||| ||||||| ||| |    
T  8400712 tgttaccaaaaaatattttgataaatttgaagaacaaaagaccacattggatgacaaatatcaagcaagtgtacattgaacgtcaacaaatatggaaggc 8400811  T
Q  112 aaacagaggtgacaagacggtgttgc 137  Q
    ||| |||||||||||||||| |||||    
T  8400812 aaatagaggtgacaagacggcgttgc 8400837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 43827538 - 43827425
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| |||||||||||| |||||||| | ||| || ||||||||||||| |||| |||||||||| |||  ||||||| ||| ||||    
T  43827538 ttccaagaaatattttgataaatttgaagaacaaaagaccacattgcatgacaaatatcaagcaagtgtacaatgaacgtcagcaaatatggaaggcaaa 43827439  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  43827438 tagaggtgacaaga 43827425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 16794543 - 16794464
Alignment:
Q  17 ccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatca 96  Q
    |||||||||||||||  |||||||||||  |||||  || | | || ||||||||||||| |||| ||||||||||||||    
T  16794543 ccaaaaaatattttgacaaatttgaagaagaaaaggaaagagtccatgacaaatatcaagcaagtctacaatgaacatca 16794464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8194210 - 8194146
Alignment:
Q  17 ccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagt 81  Q
    |||||||||||||||  |||||||||||  ||||||||| | | || ||||||||||||| ||||    
T  8194210 ccaaaaaatattttgacaaatttgaagaagaaaagacaagagtccatgacaaatatcaagcaagt 8194146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6182794 - 6182925
Alignment:
Q  4 gagtttggtgtttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagta--agtatacaatgaacatcaataaa 101  Q
    |||||||||| || |||||||||||||||||||||| ||||  ||||||||| | | || |||||| |||||  |  | ||||||||||||||||| |||    
T  6182794 gagtttggtgctttcaaaaaatattttgttaaattttaagagaaaaagacaagagtgcatgacaaacatcaaaaacaaatatacaatgaacatcaaaaaa 6182893  T
Q  102 tatgaaagtcaaacagaggtgacaagacggtg 133  Q
    |||  |||||||||||||||||||||||||||    
T  6182894 tattcaagtcaaacagaggtgacaagacggtg 6182925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 44049739 - 44049861
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| ||||| |||| |||| ||||||| ||| ||||    
T  44049739 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaacgaacgtcaacaaatatggaaggcaaa 44049838  T
Q  115 cagaggtgacaagacggtgttgc 137  Q
     ||||||||||||| | ||||||    
T  44049839 tagaggtgacaagaagctgttgc 44049861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 4976884 - 4976997
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||  ||||    
T  4976884 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaatgcaaa 4976983  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  4976984 tagaggtgacaaga 4976997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 11502635 - 11502748
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || || |||| | ||| ||||| ||||||||| |||| ||||||| ||| ||||    
T  11502635 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgataaatgtgaagcaagtaaacaatgaacgtcaacaaatatggaagacaaa 11502734  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  11502735 tagaggtgacaaga 11502748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 51643427 - 51643315
Alignment:
Q  18 caaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacag 117  Q
    |||||||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| ||| |||||| |||| ||||||| ||| |||| ||    
T  51643427 caaaaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtaaagcaagtgtacgatgaacgtcaacaaatatggaaggcaaatag 51643328  T
Q  118 aggtgacaagacg 130  Q
    || ||||||||||    
T  51643327 agttgacaagacg 51643315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 38463769 - 38463656
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    ||||||||||||||||| || ||||||||  |||||||| | | | || ||||||| | ||| |||| |||||||||| |||| ||||| | ||| ||||    
T  38463769 ttccaaaaaatattttgatacatttgaaggacaaaagaccacactgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatacggaaggcaaa 38463670  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  38463669 tagaggtgacaaga 38463656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 4769284 - 4769376
Alignment:
Q  36 atttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagaggtgacaaga 128  Q
    ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||  || | ||||||| ||| |||| |||||||||||||    
T  4769284 atttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaatgtctacaaatatggaaggcaaatagaggtgacaaga 4769376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 24220297 - 24220408
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| |||||||||| | |||||||| | ||| || |||||||||||||||||| || ||| ||| |||| ||||||| ||| ||||    
T  24220297 ttccaagaaatattttgataaatttgaaaaacaaaagaccacattgcatgacaaatatcaagtaagtgtaaaataaacgtcaacaaatatggaaggcaaa 24220396  T
Q  115 cagaggtgacaa 126  Q
     |||||||||||    
T  24220397 tagaggtgacaa 24220408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 18607125 - 18607238
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||| | |||||||| | ||| || ||||||| | ||| |||| ||||||||||||||| ||||||| ||| ||||    
T  18607125 ttccaagaaatattttgatacatttgaataacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacatcaacaaatatggaaggcaaa 18607224  T
Q  115 cagaggtgacaaga 128  Q
     |||||||| ||||    
T  18607225 tagaggtgataaga 18607238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 29287880 - 29287767
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || || |||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  29287880 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgaaaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 29287781  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  29287780 tagaggtgacaaga 29287767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 31147459 - 31147564
Alignment:
Q  23 aatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaacagaggtg 122  Q
    ||||||||  || ||||||||| |||||||| | ||| || || |||| | ||| |||| |||||||||| |||| ||||||| ||| |||| |||||||    
T  31147459 aatatttttatacatttgaagaacaaaagaccacattgcatgataaatttgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaatagaggtg 31147558  T
Q  123 acaaga 128  Q
    ||||||    
T  31147559 acaaga 31147564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 35965677 - 35965564
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  35965677 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 35965578  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  35965577 tagaggtgacaaga 35965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 39751960 - 39751847
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  39751960 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 39751861  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  39751860 tagaggtgacaaga 39751847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 45455505 - 45455616
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| ||||| || | ||| || ||||||| | ||| |||| |||||| ||| |||| ||||||||||| ||||    
T  45455505 ttccaagaaatattttgatacatttgaagaacaaaataccatattgcatgacaaatgtgaagcaagtgtacaatcaacgtcaacaaatatgaaaggcaaa 45455604  T
Q  115 cagaggtgacaa 126  Q
     |||||||||||    
T  45455605 tagaggtgacaa 45455616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 2145936 - 2145837
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||  | ||| || ||||||| | ||| |||| ||||||||||||||| ||||||| ||| ||||    
T  2145936 ttccaagaaatattttgatacatttgaagaacaaaagatcacattgcatgacaaatgtgaagcaagtgtacaatgaacatcaacaaatatggaaggcaaa 2145837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 12391 - 12514
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatat-gaaagtcaa 113  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || ||||||| | ||| |||| |||||||||| |||| |||||| ||||| |||    
T  12391 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgacaaatgtgaagcaagtgtacaatgaacgtcaacaaatatcgaaaggcaa 12490  T
Q  114 acagaggtgacaagacggtgttgc 137  Q
    | ||||||||||||| | ||||||    
T  12491 atagaggtgacaagaagctgttgc 12514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 17198 - 17311
Alignment:
Q  15 ttccaaaaaatattttgttaaatttgaagaccaaaagacaaaattacaagacaaatatcaagtaagtatacaatgaacatcaataaatatgaaagtcaaa 114  Q
    |||||| |||||||||| || ||||||||| |||||||| | ||| || || |||| | ||| |||| |||||||||| |||| ||||||| ||| ||||    
T  17198 ttccaagaaatattttgatacatttgaagaacaaaagaccacattgcatgaaaaatgtgaagcaagtgtacaatgaacgtcaacaaatatggaaggcaaa 17297  T
Q  115 cagaggtgacaaga 128  Q
     |||||||||||||    
T  17298 tagaggtgacaaga 17311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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