View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_135 (Length: 334)
Name: NF9288A_low_135
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_135 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 44 - 328
Target Start/End: Original strand, 35275180 - 35275464
Alignment:
| Q |
44 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275180 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
35275279 |
T |
|
| Q |
144 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35275280 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
35275379 |
T |
|
| Q |
244 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
328 |
Q |
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| T |
35275380 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
35275464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 48 - 328
Target Start/End: Original strand, 35289296 - 35289576
Alignment:
| Q |
48 |
ttcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaaag |
147 |
Q |
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||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |
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| T |
35289296 |
ttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatcttcaccatagcagctgcaaagtctcttttaaaag |
35289395 |
T |
|
| Q |
148 |
cagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataag |
247 |
Q |
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|| | || ||||||||| ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||| |
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| T |
35289396 |
caatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagcaacaag |
35289495 |
T |
|
| Q |
248 |
gtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagg |
328 |
Q |
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||| ||||| |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||||| ||||| |
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| T |
35289496 |
gtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtagg |
35289576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 44 - 322
Target Start/End: Original strand, 35307093 - 35307368
Alignment:
| Q |
44 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
143 |
Q |
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||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |
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| T |
35307093 |
tcaattcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattttactcagtttcaccatagcaacggcaaagtctctagaa |
35307192 |
T |
|
| Q |
144 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
243 |
Q |
| |
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|||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | |||| |
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| T |
35307193 |
aaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaa |
35307289 |
T |
|
| Q |
244 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
322 |
Q |
| |
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||||| ||||| |||||||| ||||| | |||||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
35307290 |
caaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcaccaccaga |
35307368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 44 - 314
Target Start/End: Original strand, 35311436 - 35311703
Alignment:
| Q |
44 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
143 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| ||||| |
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| T |
35311436 |
tcaattcacaagcctacaattctttctgatctccccattagtcccagtgagaggactgattttactcagtttcaccatagcagcagcaaagtctgtagaa |
35311535 |
T |
|
| Q |
144 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
243 |
Q |
| |
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|||||||| ||| ||||||| ||||||||||| | |||||| ||| ||||||||| |||||||||||||| | |||||||| | |||| |
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| T |
35311536 |
aaagcagcctcattggtactataactcctaaccaaattatcttgaga---cccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaa |
35311632 |
T |
|
| Q |
244 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtca |
314 |
Q |
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||||| |||||||||||||||||||| | |||||||||| || ||||| |||||||||||||||||| |
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| T |
35311633 |
caaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggtgctaaattggtgtca |
35311703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 322
Target Start/End: Original strand, 35279949 - 35280225
Alignment:
| Q |
46 |
aattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaaaa |
145 |
Q |
| |
|
||||||||| |||||||||||||| || || ||||||||||| || |||||||||||| | |||||||||||||||||| |||||||||||| ||| |
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| T |
35279949 |
aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatcttcaccatagcaaaagcaaagtctcttctaaa |
35280048 |
T |
|
| Q |
146 |
agcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaata |
245 |
Q |
| |
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|||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| |||||||||||| ||||| ||||||||||||| |
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| T |
35280049 |
agcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttattagcaact |
35280148 |
T |
|
| Q |
246 |
aggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
322 |
Q |
| |
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|| ||| ||||||||||||||||||| || |||| ||||||||||| || || ||||| |||||||| ||||| |
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| T |
35280149 |
agatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccaga |
35280225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 322
Target Start/End: Original strand, 35322094 - 35322369
Alignment:
| Q |
44 |
tcaattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatcttcaccatagcagcagcaaagtctctagaa |
143 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||| | |
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| T |
35322094 |
tcaattcacaagcctacaattctttctaatctccccattagtcccagttagaggattaattttactcagtttcaccatagcaacagcaaagtctcttcta |
35322193 |
T |
|
| Q |
144 |
aaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaa |
243 |
Q |
| |
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|||| |||||||| ||||||| ||||||||||| | |||||| ||| |||||||||| ||||||||||||| | ||||||||| | |||| |
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| T |
35322194 |
aaagtagcaccattggtactataactcctaaccaaattatcttgaga---cccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaa |
35322290 |
T |
|
| Q |
244 |
taaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccaga |
322 |
Q |
| |
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||| | ||||| |||||||||||||| || |||||||||| || |||| |||||||||||||||||||||||||| |
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| T |
35322291 |
caagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtcaccaccaga |
35322369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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