View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_140 (Length: 331)

Name: NF9288A_low_140
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_140
NF9288A_low_140
[»] chr7 (1 HSPs)
chr7 (26-314)||(47285664-47285952)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 47285952 - 47285664
Alignment:
Q  26 accaaatcagataaacggtttagtgtaatgtcaccggcttctagacctagactctaccattcatctgcaactgtgttaagagatggaagagttttagtag 125  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47285952 accaaatcagataaacgatttagtgtaatgtcaccagcttctagacctagactctaccattcatctgcaattgtgttaagagatggaagagttttagtag 47285853  T
Q  126 gtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcattttctccgccctatttgtcgttggagtt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47285852 gtggtagtaatccacatgtaaattacaattttaccggagttgaatttccaaccgatttaagcttagaggcattttctccgccctatttgtcgttggagtt 47285753  T
Q  226 tgatctggtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtggcatttacggtagctaagt 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47285752 tgatctagtgcggccaacgatttggcatgtcaccaataaaattttagggtatagggtgttttattatgtgacatttacggtagctaagt 47285664  T

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