View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_148 (Length: 321)
Name: NF9288A_low_148
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_148 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 7653938 - 7654253
Alignment:
| Q |
1 |
aatatctcgaataggattacttcttgtgcaagaagcatattagaaaccnnnnnnnnnnnnnnnnnnccatcttgtgcaagaaacccacttgaaggatact |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
7653938 |
aatatctcgaataggattacttcttgtgcaagaaacatattagaaaccaaaaagtaaaaaagaaaaccatcttgtgcaagaaacccacttgaaggatatt |
7654037 |
T |
|
| Q |
101 |
attgatacattgatgattaatatgaaagtatatgtggctagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtcacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7654038 |
attgatacattgatgattaatatgaaagtatatgtgattagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtcacaa |
7654137 |
T |
|
| Q |
201 |
cacaatttataatatataccacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtttgtc |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7654138 |
cacaatttataatatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtttgtc |
7654237 |
T |
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| Q |
301 |
ctcaaatgttaaggct |
316 |
Q |
| |
|
|||||||||||||||| |
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| T |
7654238 |
ctcaaatgttaaggct |
7654253 |
T |
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