View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_15 (Length: 487)

Name: NF9288A_low_15
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_15
NF9288A_low_15
[»] chr7 (7 HSPs)
chr7 (1-319)||(2787119-2787435)
chr7 (355-482)||(2786983-2787109)
chr7 (352-435)||(38372525-38372608)
chr7 (352-407)||(41677369-41677424)
chr7 (352-406)||(34922927-34922981)
chr7 (355-411)||(12473197-12473253)
chr7 (361-397)||(21249161-21249197)
[»] chr5 (13 HSPs)
chr5 (1-198)||(19578159-19578356)
chr5 (361-437)||(11163314-11163390)
chr5 (355-439)||(26002960-26003044)
chr5 (352-421)||(29922225-29922294)
chr5 (349-429)||(17128251-17128331)
chr5 (357-429)||(27981953-27982025)
chr5 (357-439)||(16721990-16722072)
chr5 (349-427)||(24030190-24030268)
chr5 (355-393)||(36106778-36106816)
chr5 (349-397)||(7984110-7984158)
chr5 (352-421)||(12467245-12467314)
chr5 (352-420)||(1473338-1473406)
chr5 (355-435)||(15413959-15414039)
[»] chr3 (12 HSPs)
chr3 (362-435)||(21296733-21296806)
chr3 (360-439)||(23555447-23555526)
chr3 (351-421)||(24842142-24842212)
chr3 (370-411)||(29830824-29830865)
chr3 (352-435)||(22809229-22809313)
chr3 (367-435)||(50022007-50022075)
chr3 (352-399)||(5129851-5129898)
chr3 (361-436)||(10272088-10272163)
chr3 (357-411)||(28623275-28623329)
chr3 (361-411)||(30499957-30500007)
chr3 (349-395)||(42956212-42956258)
chr3 (377-433)||(47520426-47520482)
[»] chr8 (9 HSPs)
chr8 (353-439)||(13131393-13131479)
chr8 (352-399)||(1089016-1089063)
chr8 (380-439)||(2019713-2019772)
chr8 (361-416)||(11988183-11988238)
chr8 (354-421)||(16972395-16972462)
chr8 (352-434)||(32131408-32131490)
chr8 (349-398)||(13265488-13265537)
chr8 (355-419)||(19327850-19327914)
chr8 (361-437)||(42102072-42102148)
[»] chr4 (15 HSPs)
chr4 (355-437)||(18424316-18424398)
chr4 (355-398)||(46650275-46650318)
chr4 (361-435)||(29877606-29877680)
chr4 (349-430)||(43740108-43740189)
chr4 (357-405)||(22303093-22303141)
chr4 (357-437)||(47202791-47202871)
chr4 (381-437)||(48721942-48721998)
chr4 (352-435)||(23297405-23297488)
chr4 (361-435)||(43415334-43415408)
chr4 (357-411)||(46176019-46176073)
chr4 (352-437)||(948037-948122)
chr4 (370-439)||(10794963-10795032)
chr4 (355-428)||(29996678-29996751)
chr4 (372-433)||(31022371-31022432)
chr4 (353-421)||(8130469-8130537)
[»] chr6 (6 HSPs)
chr6 (357-437)||(32615455-32615535)
chr6 (359-436)||(21871193-21871269)
chr6 (361-421)||(28758366-28758426)
chr6 (361-411)||(4272373-4272423)
chr6 (361-411)||(22816630-22816680)
chr6 (352-437)||(21891374-21891459)
[»] chr2 (5 HSPs)
chr2 (352-429)||(33321439-33321516)
chr2 (352-437)||(4090454-4090539)
chr2 (361-406)||(12683651-12683696)
chr2 (378-435)||(17797329-17797386)
chr2 (355-411)||(34913429-34913485)
[»] chr1 (8 HSPs)
chr1 (370-439)||(16225472-16225541)
chr1 (349-421)||(26435208-26435279)
chr1 (352-435)||(1265729-1265812)
chr1 (361-436)||(35897668-35897743)
chr1 (350-397)||(41003392-41003439)
chr1 (355-436)||(15631870-15631951)
chr1 (352-429)||(35590103-35590180)
chr1 (349-434)||(39941343-39941423)
[»] scaffold0100 (1 HSPs)
scaffold0100 (357-411)||(38493-38547)
[»] scaffold0015 (1 HSPs)
scaffold0015 (372-438)||(48535-48601)


Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2787435 - 2787119
Alignment:
Q  1 tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2787435 tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 2787336  T
Q  101 gatggttggaattgtttgaagcggtttgtttcttatttttccaacttaaaggcgtggaattggatgcatgtctgcctaattttttagtatatatgtttga 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  2787335 gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagt--atatgtttga 2787238  T
Q  201 tttaatttgtatatttgtttgtacttttcttggtcgattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtgatttaatattt 300  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2787237 tttaatttgtatatttgtttgtacttttcttggtcaattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtaatttaatattt 2787138  T
Q  301 tatgatattttttgtatgc 319  Q
    | |||||||||| ||||||    
T  2787137 tgtgatatttttcgtatgc 2787119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 355 - 482
Target Start/End: Complemental strand, 2787109 - 2786983
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggacggttacttatttaca 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  2787109 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtata-tctaaaaaataagtcaattcaaacggacggttacttatttaca 2787011  T
Q  455 aaatggatttgattggaacttgcgtgtt 482  Q
    |||||||||||||||||||||| |||||    
T  2787010 aaatggatttgattggaacttgagtgtt 2786983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 38372608 - 38372525
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||| |||||||| |||||| | | |||||||||||||||||  ||||||| |||| || |||||| ||||||| |||||    
T  38372608 ttgacaaacttatgaataatacataagagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaac 38372525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 41677424 - 41677369
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgt 407  Q
    |||||||| |||||||| |||||| |||| ||||||||||||||||  ||||||||    
T  41677424 ttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttgt 41677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 34922981 - 34922927
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 406  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  |||||||    
T  34922981 ttgacaaacttatgaataatacataaaagcttatttatttgcataagttgttttg 34922927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 12473253 - 12473197
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    ||||| |||||||| |||||| ||||||||||| |||||||||  ||||||| ||||    
T  12473253 acaaacttatgaataatacataaaaacttatttgtttgcataagttgttttgcataa 12473197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 397
Target Start/End: Complemental strand, 21249197 - 21249161
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataa 397  Q
    |||||||| |||||| |||||||||||||||||||||    
T  21249197 ttatgaataatacataaaaacttatttatttgcataa 21249161  T

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Target: chr5 (Bit Score: 130; Significance: 4e-67; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 19578159 - 19578356
Alignment:
Q  1 tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt 100  Q
    ||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||  || |||||||||||||||||||||||||| ||    
T  19578159 tggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttccttt 19578258  T
Q  101 gatggttggaattgtttgaagcggtttgtttcttatttttccaacttaaaggcgtggaattggatgcatgtctgcctaattttttagtatatatgttt 198  Q
    ||||||||||||  |||| ||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  19578259 gatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttt 19578356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 11163314 - 11163390
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    ||||||||||||||| |||||||||| |||| |||||  ||||||| |||| ||||||||| ||||||| |||||||    
T  11163314 ttatgaatcatacataaaaacttattgatttacataagctgttttgcataagctaaaaaataagtcaatccaaacgg 11163390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 439
Target Start/End: Complemental strand, 26003044 - 26002960
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    ||||| |||| ||| |||||| |||||||||||||||||||||| |||||||||||| ||  ||||| ||| ||| |||||||||    
T  26003044 acaaacttataaataatacataaaaacttatttatttgcataaactgttttgtataagctctaaaataagttaatccaaacggac 26002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 29922225 - 29922294
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||| |||| || ||||||    
T  29922225 ttgacaagcttatgaataatacataaaaacttatttatttgcataaactgttttgcataagctcaaaaat 29922294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 429
Target Start/End: Complemental strand, 17128331 - 17128251
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 429  Q
    ||||||| || ||||||||| |||||| ||| |||||||||||||||||  ||||||| |||| || |||||| |||||||    
T  17128331 actttgataagtttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaat 17128251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 27981953 - 27982025
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 429  Q
    |||||||||||| |||||| |||| |||||||||| ||||| |||||||||||||  | |||||| |||||||    
T  27981953 aaatttatgaataatacataaaaatttatttattttcataagatgttttgtataagttcaaaaataagtcaat 27982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 16722072 - 16721990
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| ||||| ||  ||||| ||  |||||||||||||    
T  16722072 aaatttataaataatacataaaaacttatttatttgcataaattattttctataagctttaaaataagctaattcaaacggac 16721990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 427
Target Start/End: Complemental strand, 24030268 - 24030190
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtca 427  Q
    ||||||||||  |||||||| |||||| ||| |||||||||||| ||||  |||||||||||| || |||||| |||||    
T  24030268 actttgacaagcttatgaataatacataaaagcttatttatttggataagctgttttgtataagcttaaaaataagtca 24030190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 393
Target Start/End: Original strand, 36106778 - 36106816
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgc 393  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  36106778 acaaatttatgaatcatacataaaaacttatttatttgc 36106816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 397
Target Start/End: Complemental strand, 7984158 - 7984110
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 397  Q
    ||||||||||| |||||||| |||||| |||||||| ||||||||||||    
T  7984158 actttgacaaacttatgaataatacataaaaacttagttatttgcataa 7984110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 12467314 - 12467245
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    |||||||  |||||||| |||||| ||| ||||||||||||||||| || ||||| |||| || ||||||    
T  12467314 ttgacaagcttatgaataatacataaaagcttatttatttgcataacattttttgaataaactcaaaaat 12467245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 1473406 - 1473338
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaa 420  Q
    |||||||  |||||||| |||||| ||| |||||||||||||||||  |||| ||||||| || |||||    
T  1473406 ttgacaagcttatgaataatacataaaagcttatttatttgcataagttgttctgtataagctcaaaaa 1473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 15414039 - 15413959
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    ||||| |||| ||| |||||| || ||||||||||||||||||  ||||||| |||| ||  ||||| ||||||| |||||    
T  15414039 acaaacttatcaataatacattaatacttatttatttgcataagctgttttgcataagctctaaaataagtcaatccaaac 15413959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 435
Target Start/End: Complemental strand, 21296806 - 21296733
Alignment:
Q  362 tatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    ||||||| ||| || |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||| |||||    
T  21296806 tatgaataatagataaaaacttatttatttgcataaattgttttgcataatctcaaaaataagtcaatccaaac 21296733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 360 - 439
Target Start/End: Complemental strand, 23555526 - 23555447
Alignment:
Q  360 tttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    |||| |||| |||||| ||| |||||||||||||||||| ||||| |||||| || |||||| || |||| |||||||||    
T  23555526 tttacgaataatacataaaagcttatttatttgcataaactgtttcgtataagctcaaaaataagccaatccaaacggac 23555447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 24842142 - 24842212
Alignment:
Q  351 tttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    ||||||||| |||||||| |||||| |||| ||||||||||||||||  |||||| ||||| || ||||||    
T  24842142 tttgacaaacttatgaataatacataaaaatttatttatttgcataagttgttttttataaccttaaaaat 24842212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 411
Target Start/End: Original strand, 29830824 - 29830865
Alignment:
Q  370 atacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  29830824 atacataaaaacttatttatttgcataaactgttttgtataa 29830865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 22809229 - 22809313
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaa-cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||  |||||||| ||| || |||| |||||||||||||||||  ||||||| |||| || |||||| |||||||||||||    
T  22809229 ttgacaagcttatgaataatatataaaaagcttatttatttgcataagctgttttgcataacctcaaaaataagtcaattcaaac 22809313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 50022007 - 50022075
Alignment:
Q  367 atcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    ||||||||| ||| |||||||||||||||||| ||||||| |||||||  ||||| || |||| |||||    
T  50022007 atcatacatcaaagcttatttatttgcataaactgttttgcataatctctaaaataagccaatccaaac 50022075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Original strand, 5129851 - 5129898
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 399  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  5129851 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 5129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 10272163 - 10272088
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 436  Q
    |||||||| |||||| |||  |||||||||||||| |  ||||||| |||| ||||||||| ||||||| ||||||    
T  10272163 ttatgaataatacataaaagtttatttatttgcatgagttgttttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 28623275 - 28623329
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  28623275 aaatttataaataatacataaaaacttatttatttgcataagttgttttctataa 28623329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 30500007 - 30499957
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    |||| ||| |||||| |||| ||||||||||||||||| ||||||||||||    
T  30500007 ttataaataatacataaaaatttatttatttgcataaactgttttgtataa 30499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 395
Target Start/End: Original strand, 42956212 - 42956258
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcat 395  Q
    |||| ||||| ||||||||| |||||| |||||||||||||||||||    
T  42956212 acttcgacaagtttatgaataatacataaaaacttatttatttgcat 42956258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 377 - 433
Target Start/End: Complemental strand, 47520482 - 47520426
Alignment:
Q  377 aaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 433  Q
    ||||||||||||| |||||||| | |||| ||||| || |||||| |||||||||||    
T  47520482 aaaacttatttatatgcataaattattttttataaactcaaaaataagtcaattcaa 47520426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 13131479 - 13131393
Alignment:
Q  353 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    ||||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| |||| ||||||||| ||  ||| |||||||||    
T  13131479 tgacaaacttatgaataatacataaaagcttatttatttgcataatttgttttgcataagctaaaaaataagcaaatccaaacggac 13131393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 399
Target Start/End: Complemental strand, 1089063 - 1089016
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaa 399  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||||    
T  1089063 ttgacaagcttatgaataatacattaaaacttatttatttgcataaaa 1089016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 2019713 - 2019772
Alignment:
Q  380 acttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    |||||||||||||||||| |||||||| |||| ||  ||||| ||||||| |||||||||    
T  2019713 acttatttatttgcataagatgttttgcataagctctaaaataagtcaatccaaacggac 2019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 11988238 - 11988183
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaa 416  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||| ||||| ||||    
T  11988238 ttataaataatacataaaaacttatttatttgcataaattgttttatataagctaa 11988183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 421
Target Start/End: Original strand, 16972395 - 16972462
Alignment:
Q  354 gacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    |||||| |||||||| ||||||  || |||||||||||||| ||| ||||||| |||| |||||||||    
T  16972395 gacaaacttatgaataatacatacaagcttatttatttgcaaaaattgttttgcataagctaaaaaat 16972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 32131490 - 32131408
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 434  Q
    |||||||| ||| |||| || ||| ||| |||||||||||||||||  ||||||| |||| || |||||| ||||||| ||||    
T  32131490 ttgacaaacttaggaataatgcataaaagcttatttatttgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 398
Target Start/End: Complemental strand, 13265537 - 13265488
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaa 398  Q
    ||||||||||  |||||||| |||||| ||| ||||||||||||||||||    
T  13265537 actttgacaagcttatgaataatacataaaagcttatttatttgcataaa 13265488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 19327914 - 19327850
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaa 419  Q
    ||||| |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| |||||||    
T  19327914 acaaacttatgaataatacataaaagtttatttatttgcataagttgttttgcataagctaaaaa 19327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 42102148 - 42102072
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||  ||||| ||| ||| |||||||    
T  42102148 ttataaataatacataaaaacttatttatttgcataagctgttttatataagctctaaaataagttaatccaaacgg 42102072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 18424316 - 18424398
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||| ||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| || ||||||  ||||||||||||||    
T  18424316 acaagtttatgaataatacataaaagcttatttatttgtataaattgttttgcataagctcaaaaatatgtcaattcaaacgg 18424398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 46650318 - 46650275
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaa 398  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  46650318 acaaatttatgaataatacatgaaagcttatttatttgcataaa 46650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 435
Target Start/End: Complemental strand, 29877680 - 29877606
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||| |||| || |||||| || |||| |||||    
T  29877680 ttatgaataatacataaaagcttatttatttgcataaattgttttgcataagctcaaaaataagccaatccaaac 29877606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 43740108 - 43740189
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaatt 430  Q
    |||| ||||| ||||||||| |||  | ||||||||||||||| |||||| ||||||||||||  | |||||| ||||||||    
T  43740108 acttagacaagtttatgaataatatgtaaaaacttatttattttcataaattgttttgtataaatttaaaaataagtcaatt 43740189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 22303141 - 22303093
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgtttt 405  Q
    |||||||| ||| |||||| |||||||||||||||||||||| ||||||    
T  22303141 aaatttataaataatacataaaaacttatttatttgcataaactgtttt 22303093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 47202871 - 47202791
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||| | | |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  47202871 aaatttataagtaatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 47202791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 48721942 - 48721998
Alignment:
Q  381 cttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||||||| ||||| | |||| ||||| ||||||||| |||||||||||||||    
T  48721942 cttatttatttgtataaattattttttataagctaaaaaataagtcaattcaaacgg 48721998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 23297488 - 23297405
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||| |||||||| |||||| ||| |||||||||||||||||  | ||||| |||| || |||||| || |||| |||||    
T  23297488 ttgacaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaaaaataagccaatccaaac 23297405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 435
Target Start/End: Original strand, 43415334 - 43415408
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||| |||||| |||||||||||||||||| ||  ||||||   ||| || |||||| |||||||||||||    
T  43415334 ttatgaataatacataaaaacttatttatttgcagaagttgttttacttaagctcaaaaataagtcaattcaaac 43415408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 46176019 - 46176073
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| |||||    
T  46176019 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataa 46176073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 948122 - 948037
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||| |||||||| |||||| ||| ||||||||||| |||||  | ||||| |||| ||||||| | ||||| | |||||||    
T  948122 ttgacaaagttatgaataatacataaaagcttatttattttcataagctattttgcataagctaaaaagtaagtcattccaaacgg 948037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 10794963 - 10795032
Alignment:
Q  370 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    |||||| ||||||||||||||| || ||  ||||||| |||| ||  ||||| |||||||||||||||||    
T  10794963 atacataaaaacttatttatttacacaagctgttttgcataagctctaaaataagtcaattcaaacggac 10795032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 428
Target Start/End: Original strand, 29996678 - 29996751
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaa 428  Q
    ||||| |||||||| ||| || ||| |||||||||||||||||| ||||||| | || || |||||| ||||||    
T  29996678 acaaacttatgaataatatataaaagcttatttatttgcataaattgttttgcaaaaactcaaaaataagtcaa 29996751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 433
Target Start/End: Complemental strand, 31022432 - 31022371
Alignment:
Q  372 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaa 433  Q
    |||| ||||||||||||||||||| | |||||||| |||| || |||||| || ||||||||    
T  31022432 acataaaaacttatttatttgcatgagatgttttgcataagctcaaaaataagacaattcaa 31022371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 8130537 - 8130469
Alignment:
Q  353 tgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    ||||||| |||||||| || ||| ||| |||||||||||||||||  ||||||| |||  |||||||||    
T  8130537 tgacaaacttatgaataatgcataaaagcttatttatttgcataagctgttttgcatatgctaaaaaat 8130469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 437
Target Start/End: Original strand, 32615455 - 32615535
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||| ||| |||||| |||||||||||||||||||||  |||||| ||||| ||| ||||| ||| ||| |||||||    
T  32615455 aaatttataaataatacataaaaacttatttatttgcataagctgttttatataagctataaaataagttaatccaaacgg 32615535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 436
Target Start/End: Complemental strand, 21871269 - 21871193
Alignment:
Q  359 atttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 436  Q
    |||||||||||| |||| |||||||||||||||| ||||| | ||||  |||| ||||||||| ||||||| ||||||    
T  21871269 atttatgaatca-acataaaaacttatttatttgtataaactatttttcataagctaaaaaataagtcaatccaaacg 21871193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 28758366 - 28758426
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    |||||||| |||||| |||| ||||||||||||||||| |||| ||||||  |||||||||    
T  28758366 ttatgaataatacataaaaatttatttatttgcataaactgttctgtatagactaaaaaat 28758426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 4272423 - 4272373
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    ||||| || |||||| |||| ||||||||||||||||| ||||||||||||    
T  4272423 ttatgtataatacataaaaagttatttatttgcataaattgttttgtataa 4272373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 22816630 - 22816680
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| |||||    
T  22816630 ttatgaatattacataaaaacttatttatttgcataaattgttttttataa 22816680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 437
Target Start/End: Original strand, 21891374 - 21891459
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||  |||||||| ||| || |||||||||||||||||||||  | || || |||| || |||||||| ||||| |||||||    
T  21891374 ttgacaagcttatgaataatatatcaaaacttatttatttgcataagctattctgcataagctcaaaaattaatcaatccaaacgg 21891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 352 - 429
Target Start/End: Original strand, 33321439 - 33321516
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 429  Q
    |||||||  |||||| | |||||| |||||||| ||||||||||||  ||||||| |||| ||||||||| |||||||    
T  33321439 ttgacaagcttatgagtaatacataaaaacttaattatttgcataagttgttttgcataagctaaaaaataagtcaat 33321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 437
Target Start/End: Complemental strand, 4090539 - 4090454
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgg 437  Q
    |||||||  |||||||| |||||| |||  ||||||||||||||||  ||||||| |||| || |||||| || ||||||| ||||    
T  4090539 ttgacaagattatgaataatacatcaaagtttatttatttgcataagctgttttgcataagctcaaaaataagccaattcagacgg 4090454  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 12683651 - 12683696
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttg 406  Q
    |||||||| |||||| |||||||||||||||||||||  |||||||    
T  12683651 ttatgaataatacattaaaacttatttatttgcataatctgttttg 12683696  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 17797329 - 17797386
Alignment:
Q  378 aaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    ||||||||||||||||||||| ||||||| ||||  |||||||| | ||||| |||||    
T  17797329 aaacttatttatttgcataaactgttttgcataagttaaaaaataaatcaatccaaac 17797386  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 34913429 - 34913485
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    ||||| |||||||| |||||| ||| |||||||||||||||||  ||||||| ||||    
T  34913429 acaaacttatgaataatacataaaagcttatttatttgcataagctgttttgcataa 34913485  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 16225541 - 16225472
Alignment:
Q  370 atacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacggac 439  Q
    |||||| ||||||||||||||| |||||| ||||||| |||| ||  ||||| ||||||| |||||||||    
T  16225541 atacataaaaacttatttatttacataaactgttttgcataagctctaaaataagtcaatccaaacggac 16225472  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 26435208 - 26435279
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaat 421  Q
    ||||||||||| |||  ||| |||||| |||||||||||||||||||||  |||||||||||| || ||||||    
T  26435208 actttgacaaacttaaaaataatacat-aaaacttatttatttgcataagctgttttgtataagctcaaaaat 26435279  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Original strand, 1265729 - 1265812
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaac 435  Q
    |||||||| |||||||| |||||| ||| ||||| | |||| ||||  ||||||| |||| || |||||| |||||||||||||    
T  1265729 ttgacaaaattatgaataatacataaaatcttatctgtttgtataagttgttttgcataagctcaaaaataagtcaattcaaac 1265812  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 35897668 - 35897743
Alignment:
Q  361 ttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 436  Q
    |||||||| ||| || |||||||||||||||||||||  ||||||| |||| || |||||| | ||||| ||||||    
T  35897668 ttatgaataataaataaaaacttatttatttgcataagttgttttgcataaccttaaaaataaatcaatccaaacg 35897743  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 397
Target Start/End: Complemental strand, 41003439 - 41003392
Alignment:
Q  350 ctttgacaaatttatgaatcatacatgaaaacttatttatttgcataa 397  Q
    |||||||||| |||| ||| |||||| |||||||||||||||||||||    
T  41003439 ctttgacaaacttataaataatacataaaaacttatttatttgcataa 41003392  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 15631951 - 15631870
Alignment:
Q  355 acaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacg 436  Q
    ||||| |||| ||| |||||| |||||||||||||||| ||||  |||||||||||| ||  ||||| | | ||||||||||    
T  15631951 acaaacttataaataatacataaaaacttatttatttgtataagttgttttgtataagctctaaaataaattaattcaaacg 15631870  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 429
Target Start/End: Complemental strand, 35590180 - 35590103
Alignment:
Q  352 ttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaat 429  Q
    |||||||  |||||||  |||||| ||| |||||||||||||||||  ||||||  |||| ||||||||| |||||||    
T  35590180 ttgacaagcttatgaactatacataaaagcttatttatttgcataagttgttttacataagctaaaaaataagtcaat 35590103  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 434
Target Start/End: Complemental strand, 39941423 - 39941343
Alignment:
Q  349 actttgacaaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaa 434  Q
    ||||||||||  |||||||| |||||| |||||| ||||||||||     ||||||||| ||| || |||||| ||||||||||||    
T  39941423 actttgacaagcttatgaataatacataaaaactcatttatttgc-----atgttttgtttaagctgaaaaataagtcaattcaaa 39941343  T

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Target: scaffold0100 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 38493 - 38547
Alignment:
Q  357 aaatttatgaatcatacatgaaaacttatttatttgcataaaatgttttgtataa 411  Q
    |||||||| ||| |||||| |||||||||||||||||||||| | |||| |||||    
T  38493 aaatttataaataatacataaaaacttatttatttgcataaactattttatataa 38547  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 48601 - 48535
Alignment:
Q  372 acatgaaaacttatttatttgcataaaatgttttgtataatctaaaaaattagtcaattcaaacgga 438  Q
    |||| ||| |||||||||||||||||  | |||||||||| ||||||||| |||||||  |||||||    
T  48601 acataaaagcttatttatttgcataagctattttgtataagctaaaaaataagtcaatcaaaacgga 48535  T

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