View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_155 (Length: 319)
Name: NF9288A_low_155
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_155 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 4146373 - 4146063
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacn |
105 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146373 |
aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaaca |
4146274 |
T |
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| Q |
106 |
nnnnnntctatacatcgattcgcttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag |
205 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146273 |
aaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag |
4146174 |
T |
|
| Q |
206 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4146173 |
ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga |
4146074 |
T |
|
| Q |
306 |
ataatctaccc |
316 |
Q |
| |
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| || |||||| |
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| T |
4146073 |
aaaagctaccc |
4146063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8018266 - 8018306
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagat |
46 |
Q |
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| T |
8018266 |
aaaagtttcagctgcatcactccgaagaaaattcaaaagat |
8018306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41430382 - 41430474
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaa |
98 |
Q |
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||||||||||||||||| |||||||||| |||||||||||| || | ||| |||| |||||||||||||||||||||| || |||||| |||| |
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| T |
41430382 |
aaaagttccagctgcatcactccgaagaaaattcaaaagatccgccaaaggagactcgtgacaaagaaactcaaagtttgatgaggcagcaaa |
41430474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 12734766 - 12734679
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca |
93 |
Q |
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||||||||||||||||| |||||||||| ||||||||||| ||| | || |||| ||||| |||||||||||||||| || |||||| |
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| T |
12734766 |
aaaagttccagctgcatcactccgaagaagattcaaaagatccgttggaggagactcgtgataaagaaactcaaagtttgatgaggca |
12734679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 30269629 - 30269706
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt |
83 |
Q |
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||||||||||||||||| |||||||||| | || |||||||| || | || |||| |||||||||||||||||||||| |
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| T |
30269629 |
aaaagttccagctgcatcactccgaagaaagttgaaaagatttgttggaggagactcgtgacaaagaaactcaaagtt |
30269706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 31525171 - 31525096
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaag |
81 |
Q |
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||||| ||||||||||| ||| |||||| ||||||||||| ||| | || |||| |||||||||||||||||||| |
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| T |
31525171 |
aaaagctccagctgcatcactgcgaagaagattcaaaagatccgttggaggagactcgtgacaaagaaactcaaag |
31525096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 44269660 - 44269737
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt |
83 |
Q |
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||||||||||||||||| ||| |||||| ||||||||||| | | || |||| |||||||||||||||||||||| |
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| T |
44269660 |
aaaagttccagctgcatcacttcgaagaagattcaaaagatccactggaggagactcgtgacaaagaaactcaaagtt |
44269737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11107039 - 11106952
Alignment:
| Q |
6 |
aaaagttccagctgcatgactccgaagagaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca |
93 |
Q |
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|||||||||| || ||| |||||||||| ||||||||||| ||| | || |||| ||| ||||||||||||| |||| || |||||| |
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| T |
11107039 |
aaaagttccaactacatcactccgaagaagattcaaaagatccgttggaggagactcgtaacaaagaaactcagagtttgatgaggca |
11106952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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