View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_16 (Length: 485)
Name: NF9288A_low_16
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 146 - 471
Target Start/End: Original strand, 28518944 - 28519269
Alignment:
| Q |
146 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518944 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
28519043 |
T |
|
| Q |
246 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgnnnnnnnnnnnnnnnnnnnnnnngcatgtgtagccatggatgaagtacttttgg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
28519044 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgtttttttcttcgaatatttttttgtatgtgtagccatggatgaagtacttttgg |
28519143 |
T |
|
| Q |
346 |
tgtttaaaaatcaataccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaagattgaaattagaacgcgacat |
445 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28519144 |
tgtttaaaaatcaataccgtaagttacacacaacaagatcatggaacttcattggtttacctctgactgccaagagaagattgaaattagaacgcgacat |
28519243 |
T |
|
| Q |
446 |
agttgttgctcttttggacacaggtt |
471 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28519244 |
agttgttgctcttttggacacaggtt |
28519269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
| Q |
16 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
28518866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 248
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
| Q |
158 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct |
248 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||| || || ||||||| ||| ||||||||| |
|
|
| T |
12728953 |
tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct |
12728863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
| Q |
158 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatctgg |
250 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||||| || ||||||||||| |
|
|
| T |
34291144 |
tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg |
34291236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 12728832 - 12728763
Alignment:
| Q |
354 |
aatcaataccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaa |
423 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| ||||| ||||| |||| |||||||||| |
|
|
| T |
12728832 |
aatcaataccgcaagctacacacaacaagatcatgggactttattggattaccattgacagctaagagaa |
12728763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 423
Target Start/End: Original strand, 34291362 - 34291425
Alignment:
| Q |
360 |
taccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaa |
423 |
Q |
| |
|
||||| |||||||||||||||||||||||| | || ||||| |||||| |||| |||||||||| |
|
|
| T |
34291362 |
taccgcaagctacacacaacaagatcatgggattttattggattacctttgacagctaagagaa |
34291425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University