View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_166 (Length: 309)

Name: NF9288A_low_166
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_166
NF9288A_low_166
[»] chr3 (27 HSPs)
chr3 (17-309)||(41985553-41985848)
chr3 (63-301)||(41980825-41981063)
chr3 (55-194)||(9494822-9494961)
chr3 (54-208)||(9407328-9407482)
chr3 (87-208)||(9343840-9343961)
chr3 (45-205)||(9425526-9425686)
chr3 (92-208)||(9448314-9448430)
chr3 (100-208)||(9329844-9329952)
chr3 (62-208)||(9617463-9617609)
chr3 (100-208)||(9336548-9336656)
chr3 (87-205)||(9655360-9655478)
chr3 (60-208)||(9695616-9695764)
chr3 (54-176)||(9397747-9397869)
chr3 (87-205)||(9646367-9646485)
chr3 (62-194)||(9352871-9353003)
chr3 (100-193)||(9340679-9340772)
chr3 (62-155)||(9377056-9377149)
chr3 (57-152)||(9614009-9614104)
chr3 (106-208)||(9416587-9416689)
chr3 (54-208)||(9432858-9433012)
chr3 (81-174)||(9441815-9441908)
chr3 (62-200)||(9626488-9626626)
chr3 (100-193)||(9347995-9348088)
chr3 (100-193)||(9369649-9369742)
chr3 (93-214)||(9756381-9756502)
chr3 (93-122)||(16011768-16011797)
chr3 (160-208)||(9686751-9686799)
[»] chr8 (3 HSPs)
chr8 (17-309)||(44688684-44688976)
chr8 (148-309)||(13170583-13170744)
chr8 (17-88)||(13170758-13170829)
[»] chr2 (1 HSPs)
chr2 (62-205)||(20694304-20694447)
[»] chr1 (8 HSPs)
chr1 (62-309)||(18991174-18991418)
chr1 (54-159)||(4439822-4439927)
chr1 (54-176)||(4428593-4428715)
chr1 (87-184)||(235208-235305)
chr1 (70-184)||(8814386-8814500)
chr1 (66-183)||(246841-246958)
chr1 (87-184)||(251418-251515)
chr1 (100-184)||(231589-231673)
[»] chr6 (7 HSPs)
chr6 (60-208)||(7041464-7041612)
chr6 (54-190)||(7046801-7046937)
chr6 (62-190)||(7025720-7025854)
chr6 (62-190)||(7012784-7012918)
chr6 (129-190)||(7029850-7029911)
chr6 (129-190)||(9170854-9170915)
chr6 (63-184)||(9159519-9159646)
[»] chr7 (2 HSPs)
chr7 (63-169)||(3695661-3695767)
chr7 (100-208)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (70-194)||(18571086-18571213)
chr5 (63-159)||(33541623-33541719)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 41985553 - 41985848
Alignment:
Q  17 acataccacaaagcatctggtcaaaatcgttgaatgaatcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaa 116  Q
    |||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41985553 acatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaa 41985652  T
Q  117 cgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaagctttaaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41985653 cgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaa 41985752  T
Q  217 ccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacgac---tcacgctcactctctaccaggaatttcatgtcccct 309  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||   |||| |||||||||||||||||||||||||||||||    
T  41985753 ccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccct 41985848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 63 - 301
Target Start/End: Original strand, 41980825 - 41981063
Alignment:
Q  63 aaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 162  Q
    |||||| | |||||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41980825 aaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtc 41980924  T
Q  163 aacttgacccatttcttctcctcctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtcta 262  Q
    |||||||||||||||||||| | || | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |    
T  41980925 aacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtcca 41981024  T
Q  263 ctagcaacgactcacgctcactctctaccaggaatttca 301  Q
    |||||||  | |||| |||||||||||||||||||||||    
T  41981025 ctagcaataattcaccctcactctctaccaggaatttca 41981063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  55 tcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 154  Q
    |||||| |||||||||||||||| | ||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  155 aactcgccaacttgacccatttcttctcctcctcatcaag 194  Q
    |||||  ||| || |||||| || |||||| |||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 9407328 - 9407482
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    ||||||| |||||| ||||||||| | |||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||    
T  9407328 atcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccct 9407427  T
Q  154 aaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
    ||||||  |||||| |||||| | || | || ||| |||||||| ||||||||||    
T  9407428 aaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 9343840 - 9343961
Alignment:
Q  87 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcc 186  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| ||||| |||||||||  |    
T  9343840 aacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatc 9343939  T
Q  187 tcatcaagtctgaacacatcaa 208  Q
    ||||||||  | ||||||||||    
T  9343940 tcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  45 gttgaatgaatcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaact 144  Q
    |||| ||| ||||||  |||||||||||||||| | |||| ||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  145 ctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacat 205  Q
    |||| || |||||||  |||||| |||||||| || | || ||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 9448314 - 9448430
Alignment:
Q  92 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatc 191  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| |||||||||||||||| |||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  192 aagtctgaacacatcaa 208  Q
    |||  | ||||||||||    
T  9448414 aagcttaaacacatcaa 9448430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 9329844 - 9329952
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctga 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||||||||||||||||  | ||||| | ||||||||| || |    
T  9329844 gaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattcgccaacttgacccaccttttctctttctcatcaagcctaa 9329943  T
Q  200 acacatcaa 208  Q
    |||||||||    
T  9329944 acacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 208
Target Start/End: Complemental strand, 9617609 - 9617463
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 161  Q
    |||||||||||||||| | ||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||||||| |       
T  9617609 taaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccctaaattttt 9617510  T
Q  162 caacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
    |||||| |||||||||||||| | ||||| ||  |||||||| ||||    
T  9617509 caacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 100 - 208
Target Start/End: Original strand, 9336548 - 9336656
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| || |||||||||  | ||||| | ||||||||| || |    
T  9336548 gaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattcgtcagcttgacccaccttttctctttctcatcaagcctaa 9336647  T
Q  200 acacatcaa 208  Q
    |||||||||    
T  9336648 acacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 9655478 - 9655360
Alignment:
Q  87 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcc 186  Q
    |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| |||||||||||||||| |    
T  9655478 aacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttc 9655379  T
Q  187 tcatcaagtctgaacacat 205  Q
    |||| || |||||| ||||    
T  9655378 tcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 208
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  60 actaaagatgacacaatttc-atttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaact 158  Q
    |||| ||||||||||||| | ||||| ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |    
T  9695764 actatagatgacacaattcccatttg-caacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaatt 9695666  T
Q  159 cgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
     | |||||||||||| |||||||||| ||||||||| ||||| |||||||    
T  9695665 ggtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 9397747 - 9397869
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    ||||||| |||||| ||||||||| | |||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||||||    
T  9397747 atcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccct 9397846  T
Q  154 aaactcgccaacttgacccattt 176  Q
    ||||||  |||||| || |||||    
T  9397847 aaactcatcaacttcacgcattt 9397869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 9646485 - 9646367
Alignment:
Q  87 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcc 186  Q
    |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| |||||||||||||||| |    
T  9646485 aacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcacccatttcttctccttc 9646386  T
Q  187 tcatcaagtctgaacacat 205  Q
    |||| || |||||| ||||    
T  9646385 tcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 194
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 161  Q
    |||||||||||||||||| ||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  162 caacttgacccatttcttctcctcctcatcaag 194  Q
    |||||| ||||| |||||||||  |||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaa 193  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||| ||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 155  Q
    |||||||||||||||||| ||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  57 atcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 152  Q
    |||| ||||||| |||||||||| ||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 9416587 - 9416689
Alignment:
Q  106 gaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacat 205  Q
    ||||||||||| ||||||  |||| | |||||||| || |||||||||||||||| |||||| |||||||| || | || ||| ||||| | ||||||||    
T  9416587 gaagcagaaaatgaacatttattcacgaagaacaacaccctatcccctaaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacat 9416686  T
Q  206 caa 208  Q
    |||    
T  9416687 caa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 208
Target Start/End: Original strand, 9432858 - 9433012
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    ||||||| ||||||||| |||||| | || |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |||    
T  9432858 atcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctcct 9432957  T
Q  154 aaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
    ||| ||   | ||| ||||| ||| |||||| ||||||||||||||| |||||||    
T  9432958 aaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 174
Target Start/End: Complemental strand, 9441908 - 9441815
Alignment:
Q  81 tttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccat 174  Q
    |||||||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| ||||||    
T  9441908 tttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcacccat 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 200
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 161  Q
    |||||||||  ||||| | ||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  162 caacttgacccatttcttctcctcctcatcaagtctgaa 200  Q
    ||| || |||||||||||||||| ||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 9347995 - 9348088
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaa 193  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||| ||||||||    
T  9347995 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 9369649 - 9369742
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaa 193  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |  |||||| ||||| |||||||||| ||||||||    
T  9369649 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcctcaacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  93 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatca 192  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| | |||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  193 agtctgaacacatcaagcttta 214  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  93 caaatccgaagcagaagcagaaaacgaaca 122  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  160 gccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
    |||||||||||||| |||||||| | ||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 44688976 - 44688684
Alignment:
Q  17 acataccacaaagcatctggtcaaaatcgttgaatgaatcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaa 116  Q
    |||| ||||||||||| | |||||||| |||||| || |||  | | ||||| |||||||| | |||| ||| ||||||||||||||||| || ||||||    
T  44688976 acatcccacaaagcatatcgtcaaaatagttgaaggattcacaagtgaagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaa 44688877  T
Q  117 cgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaagctttaaa 216  Q
     ||| || |||||||||||||||||| ||||| |||||||||||  ||||| ||||||||||| | || |||||  ||  ||||||||||||||  || |    
T  44688876 tgaatattcattccccaagaacaaaattctattccctaaactcgttaactttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtaga 44688777  T
Q  217 ccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacgactcacgctcactctctaccaggaatttcatgtcccct 309  Q
    ||||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||| ||||||  |||||||||||||||||||| |||||||||    
T  44688776 ccatcttcacccgggaacccaaaaccatgagagtcatagatgtccactagcaacaactcaccttcactctctaccaggaattttatgtcccct 44688684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 13170744 - 13170583
Alignment:
Q  148 tcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 247  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  248 agtcatatatgtctactagcaacgactcacgctcactctctaccaggaatttcatgtcccct 309  Q
     |||||| ||||| ||||||||| |||||| ||| ||||| |||| ||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccct 13170583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 13170829 - 13170758
Alignment:
Q  17 acataccacaaagcatctggtcaaaatcgttgaatgaatcatcactaaagatgacacaatttcatttgacaa 88  Q
    |||| ||||||||||||| ||||| || || ||||| |||||||||||||||||||||||||| ||||||||    
T  13170829 acatcccacaaagcatctcgtcaacatagtggaatgcatcatcactaaagatgacacaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 62 - 205
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 161  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  162 caacttgacccatttcttctcctcctcatcaagtctgaacacat 205  Q
    |||  | ||||||||||||||||  |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 309
Target Start/End: Original strand, 18991174 - 18991418
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 161  Q
    |||||| ||||||||| | |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||      
T  18991174 taaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctctt 18991273  T
Q  162 caacttgacccatttcttctcctcctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtct 261  Q
    | || |   ||||| |||||    ||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | |||||     
T  18991274 cgacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtcc 18991370  T
Q  262 actagcaacgactcacgctcactctctaccaggaatttcatgtcccct 309  Q
    ||||||||| ||||||  |||| |||||||| ||||||||| ||||||    
T  18991371 actagcaacaactcaccttcacactctaccaagaatttcatatcccct 18991418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 4439822 - 4439927
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    ||||||| |||||||||||||||| | |||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||     
T  4439822 atcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctccc 4439921  T
Q  154 aaactc 159  Q
    ||||||    
T  4439922 aaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 4428593 - 4428715
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    ||||||| |||||||||||||||| | |||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| ||||||||     
T  4428593 atcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccccc 4428692  T
Q  154 aaactcgccaacttgacccattt 176  Q
    ||||||| ||| || ||||||||    
T  4428693 aaactcgtcaatttcacccattt 4428715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 235208 - 235305
Alignment:
Q  87 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcct 184  Q
    |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| ||||| ||||||||||    
T  235208 aacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctcct 235305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 8814500 - 8814386
Alignment:
Q  70 acacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 169  Q
    |||||||| | ||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  170 cccatttcttctcct 184  Q
    |||| ||||||||||    
T  8814400 cccacttcttctcct 8814386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  66 gatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 165  Q
    |||||||||||| | ||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  166 ttgacccatttcttctcc 183  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 87 - 184
Target Start/End: Complemental strand, 251515 - 251418
Alignment:
Q  87 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcct 184  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| ||||    
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttcct 251418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 231589 - 231673
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcct 184  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| ||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcct 231673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 208
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  60 actaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 159  Q
    |||||||||||||||||| | |||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  160 gccaacttgacccatttcttctcctcctcatcaagtctgaacacatcaa 208  Q
    | |||||| ||||| |||||||||| ||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  54 atcatcactaaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 153  Q
    |||| |||||| ||| |||||||| | |||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  154 aaactcgccaacttgacccatttcttctcctcctcat 190  Q
    |||||||  ||||| ||||| |||||||||| |||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 155  Q
    ||||||||||| |||| | |||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  156 actcgccaacttgacccatttcttctcctcctcat 190  Q
    ||||| |||||| ||||| |||||||||| |||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  62 taaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 155  Q
    ||||||||||| |||| | |||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  156 actcgccaacttgacccatttcttctcctcctcat 190  Q
    ||| | |||||| ||||| |||||||||| |||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  129 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcat 190  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| |||||||||| |||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 9170854 - 9170915
Alignment:
Q  129 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcat 190  Q
    ||||||||||||||| ||||||||||||||||  || || ||||| |||||||||| |||||    
T  9170854 ccccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 9159646 - 9159519
Alignment:
Q  63 aaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 156  Q
    |||||||| |||||| | ||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  157 ctcgccaacttgacccatttcttctcct 184  Q
    ||||  || || ||||| ||||||||||    
T  9159546 ctcgttaatttcacccacttcttctcct 9159519  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 3695661 - 3695767
Alignment:
Q  63 aaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 162  Q
    |||||| |||||||| | |||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  163 aacttga 169  Q
    |||||||    
T  3695761 aacttga 3695767  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 208
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  100 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctcctcatcaagtctga 199  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||| ||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  200 acacatcaa 208  Q
    |||||||||    
T  450119 acacatcaa 450111  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 194
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  70 acacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 166  Q
    |||||||| | ||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  167 tgacccatttcttctcctcctcatcaag 194  Q
    | ||||| |||||||||| |||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 159
Target Start/End: Original strand, 33541623 - 33541719
Alignment:
Q  63 aaagatgacacaatttcatttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 159  Q
    ||||| ||||||||| | |||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||    
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactc 33541719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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