View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_169 (Length: 308)
Name: NF9288A_low_169
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_169 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 33905535 - 33905234
Alignment:
| Q |
1 |
tcaaaatcataactatattgtatataaaaagattcttgaatttctaaagacaaaacttcatgtaccaatatcaccaaaaattaggtggtgcatgtattga |
100 |
Q |
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| T |
33905535 |
tcaaaatcataactatattgtatataaaaacattcttgaatttctaaagacaaaacttcatgtaccaatatcaccaaaaattaggtggtgcatgtattga |
33905436 |
T |
|
| Q |
101 |
tttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttcaacttcataaaaggaaccttacgtgaaacagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905435 |
tttatgccccttatatttattattaccataaagggctctaaaaaatctcctagacctgtttgttttcaacttcataaaaggaaccttacgtgaaacagct |
33905336 |
T |
|
| Q |
201 |
tgccaaatcatttgaacagcatcaccttcctttgaaggtaactgaaattcaaagaatttttcaacttctttcaatctgttccacattcttgtccattcat |
300 |
Q |
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||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33905335 |
tgccaaatcatttcaacagcatcaccttccttagaagggaactgaaattcaaagaatttttcaacttctttcaatctgttccacattcttgtccattcat |
33905236 |
T |
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| Q |
301 |
ct |
302 |
Q |
| |
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|| |
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| T |
33905235 |
ct |
33905234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 9326228 - 9326358
Alignment:
| Q |
165 |
ttcaacttcataaaaggaaccttacgtgaaacagcttgccaaatcatttgaacagcatcaccttcctttgaaggtaactgaaattcaaagaatttttcaa |
264 |
Q |
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||||| |||||| ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| || || || | | |||||||||| | ||||| |
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| T |
9326228 |
ttcaatttcatagaaggaactttatgtgaaacagcttgccaaatcatttgtacagcatcaccttccttagatggaaaattatattcaaagaaatgttcaa |
9326327 |
T |
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| Q |
265 |
cttctttcaatctgttccacattcttgtcca |
295 |
Q |
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| T |
9326328 |
cctctttcaacttgttccacatttttgtcca |
9326358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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