View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_17 (Length: 465)
Name: NF9288A_low_17
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_17 |
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| [»] chr2 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 40094228 - 40093770
Alignment:
| Q |
7 |
tgcaggccttacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgt |
106 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40094228 |
tgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctatctgt |
40094129 |
T |
|
| Q |
107 |
tttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40094128 |
tttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccatttggtttcaaaaacgactgtggcacgtggtatc |
40094029 |
T |
|
| Q |
207 |
tgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtct |
306 |
Q |
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||||||||| |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094028 |
tgtgagatgagattaatgtctcaatcacatcatagatcaagattttttttctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtct |
40093929 |
T |
|
| Q |
307 |
gtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtagg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40093928 |
gtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtagg |
40093829 |
T |
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| Q |
407 |
ccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
465 |
Q |
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| T |
40093828 |
ccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccctgtga |
40093770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 465
Target Start/End: Complemental strand, 40063596 - 40063139
Alignment:
| Q |
7 |
tgcaggccttacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgt |
106 |
Q |
| |
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|||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
40063596 |
tgcaggccctacttttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacaaactttctagctgt |
40063497 |
T |
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| Q |
107 |
tttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatc |
206 |
Q |
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||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| |
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| T |
40063496 |
tttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatc |
40063397 |
T |
|
| Q |
207 |
tgtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtct |
306 |
Q |
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|| ||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40063396 |
tgcgagatgggattaatgtctcagtcacatcgtagatcaagatttttttt-tcatgtttaaactctttttcattgaaaatttgcaacacttacaatgtct |
40063298 |
T |
|
| Q |
307 |
gtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtagg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063297 |
gtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtagg |
40063198 |
T |
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| Q |
407 |
ccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
465 |
Q |
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| T |
40063197 |
ccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtga |
40063139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 40081945 - 40081490
Alignment:
| Q |
8 |
gcaggccttacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgtt |
107 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||| |
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| T |
40081945 |
gcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgaacacacactttccagctgtt |
40081846 |
T |
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| Q |
108 |
ttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatct |
207 |
Q |
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| T |
40081845 |
ttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatct |
40081746 |
T |
|
| Q |
208 |
gtgagatgggattaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctg |
307 |
Q |
| |
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| ||||| ||||| |||| |||| |||||||||||||||| | |||||||||| || || |||||||||||||||||||||||||||||| |
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| T |
40081745 |
gcaagatgcgattattgtctcagtaacatcatagatcaagattattttctt--tgtttaaacttttttttattgaaaatttgcaacacttacaatgtctg |
40081648 |
T |
|
| Q |
308 |
tgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggc |
407 |
Q |
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||| ||||||||||| ||| || ||||||| | | |||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
40081647 |
tgacggttttccacagttcttgcgacatttagatgaagtataaggtcctctatagttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggc |
40081548 |
T |
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| Q |
408 |
cagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40081547 |
cagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtga |
40081490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 22012538 - 22012707
Alignment:
| Q |
296 |
ttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagca |
395 |
Q |
| |
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||||||||||||||||||||||||||||||| || | ||||||| | || | | | |||||| || ||||||||||| || || | | ||| | || |
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| T |
22012538 |
ttacaatgtctgtgatggttttccacaattcttgaggcatttggatgcagaatatgttcctctataattgcatgagtcagtacagccagaattcggagag |
22012637 |
T |
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| Q |
396 |
acatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
465 |
Q |
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| T |
22012638 |
atgtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtga |
22012707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 22012288 - 22012391
Alignment:
| Q |
65 |
gggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagag |
164 |
Q |
| |
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|||||||| |||| |||||| | |||||||||| ||| |||||||||| |||||||||||| ||| || || || || ||||||||||||||||||| || |
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| T |
22012288 |
gggtgagattcagttacatgtgaacacacactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaag |
22012387 |
T |
|
| Q |
165 |
tgtt |
168 |
Q |
| |
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|||| |
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| T |
22012388 |
tgtt |
22012391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
417 |
ccaatgctttgtccatttacccaagcctcgccttttcccat |
457 |
Q |
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|||||||||||||||||||||||||| || |||||| |||| |
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| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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