View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_171 (Length: 304)
Name: NF9288A_low_171
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_171 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 41793287 - 41792984
Alignment:
| Q |
1 |
ggagaggattatcgagatttctgacacgcgccgccgtgatccggatggtagaatgccacagttttcgccggcgcaggaggcgttgcttctcattcatgag |
100 |
Q |
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| T |
41793287 |
ggagaggattatcgagatttctgacacgcgccgccgtgatccggatggtagaatgccacagttttcgccggcgcaggaggcgttgcttctcattcatgag |
41793188 |
T |
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| Q |
101 |
aggctgttggagaacgatccggggtttgaggatgaggaggactacggcggcgggagagttgggggtgggaagcgtgtttctagtaggttggttggttcga |
200 |
Q |
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| T |
41793187 |
aggctgttggagaacgatccggggtttgaggatgaggaggactacggcggcggaagaggtggtggtgggaagcgtgtttctagtaggttggttgtttcga |
41793088 |
T |
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| Q |
201 |
aaatgcatgttgggtcattgctaggaaaaggtggaaaaataattgaacagatgagaattgagacaaagacacaaattaggattcttccaagggattcgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41793087 |
aaatgcatgttgggtcattgctaggaaaaggtggaaaaataattgaacagatgagaattgagacaaagacacaaattaggattcttccaagggattcgta |
41792988 |
T |
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| Q |
301 |
tcta |
304 |
Q |
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|||| |
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| T |
41792987 |
tcta |
41792984 |
T |
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