View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_172 (Length: 303)
Name: NF9288A_low_172
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_172 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 27409683 - 27409958
Alignment:
| Q |
7 |
atcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacgacaa |
106 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||||||| |
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| T |
27409683 |
atcgtaagcatagctataggcatcaggacattggttcttgaaaaccatagagtaatttgtaggtggacatgtcgcttcggtattgtaacttccacgacaa |
27409782 |
T |
|
| Q |
107 |
caatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcgttga |
206 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||| ||||||||||||| | |||||||||| |||||| |
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| T |
27409783 |
caatattgatctgtattaaaagccaagcaagcactcttacaagcaacgacactcccatcagaaccttttacttgaagttctgcgggacacacagcgttga |
27409882 |
T |
|
| Q |
207 |
tattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaaccc |
282 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| | | ||||||||||||||| |
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| T |
27409883 |
tatttgctggacaactagcggctttgcaagggccattcccaccttgtggagttacaaaaattggcacgttgaaccc |
27409958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 27416383 - 27416088
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||| | ||| | ||||| |||||| |
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|
| T |
27416383 |
tatcatcgtaagcatagctataagcatcaggacattggttctcaaaaaacatggagtaatctgtgggtaggcatgtaccctcggtgatgtaatctccacg |
27416284 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccggggg-acacacatc |
201 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| || |
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| T |
27416283 |
acaacaatattgatatgtattaaaagccatgcaagcactcttacaagcaatgacacccaagtcagaacctgttacttgaagttccggggggacacatata |
27416184 |
T |
|
| Q |
202 |
gttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaacccataagcgttgatcac |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||| |
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|
| T |
27416183 |
gttgatatttgctggacaactagaggcttcgcaagggccattcccacctcgtggagttacagatactggcacattgaacccataagtgttgctcac |
27416088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 27388723 - 27388999
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||||||||||||| | | ||||| ||||||||||| ||||| || ||| | ||| ||| |||||| |
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|
| T |
27388723 |
tatcatcgtaagcatagctataagcttctggacattggttctcaaatatctcggagtagtttgtgggtggacatgttgcctcggtgttgaaacttccacg |
27388822 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcg |
202 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||| | ||||||||||| ||| |||||| |||| |||||||||| | |
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|
| T |
27388823 |
acaacaatattgatcggtattaaaagccaaacaagcactcttacaagcaacgacacttccatcagaaccttttaattgaagctccgcgggacacacagag |
27388922 |
T |
|
| Q |
203 |
ttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaa |
279 |
Q |
| |
|
||||| || |||||||| ||||||| ||||||| |||| | || || |||||||||| || | |||||||||||| |
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|
| T |
27388923 |
ttgatgtttgctggacagctagaggatttgcaatcgccacttccgccttgtggagttacggacattggcacgttgaa |
27388999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 27214800 - 27215081
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
|||| |||||| |||||||||||||| | || || ||||||| ||||||||||| || | ||||||||| ||| | ||||| |||||||| |||||| |
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| T |
27214800 |
tatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttcttcggtattgtaatctccacg |
27214899 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcg |
202 |
Q |
| |
|
||||||||||| |||| ||| ||||||| ||||| || |||||||||| |||| |||||| |||| | ||||| || || | ||||||||| | |
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|
| T |
27214900 |
acaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggacacacaaca |
27214999 |
T |
|
| Q |
203 |
ttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaacccat |
284 |
Q |
| |
|
||||| ||| |||||||||| |||| |||||| ||| ||||||| |||| |||||||| | |||||||||||| |||| |
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|
| T |
27215000 |
ttgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccat |
27215081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 27432509 - 27432790
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
|||| |||||| |||||||||||||| | || |||||||||| |||||||||||||| | ||||||||| ||| | ||||| |||||||| |||||| |
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|
| T |
27432509 |
tatcgtcgtaagcatagctataagcacccgggcattggttcttgaaaaccatagagtagtctgtgggtggacatttttcttcggtattgtaatctccacg |
27432608 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcg |
202 |
Q |
| |
|
||||||||||| |||| || ||||||| ||||| || |||||||||| |||| ||||||||||| | ||||| || || | || |||||| | |
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|
| T |
27432609 |
acaacaatatttatcttcgtttaaagccaaacaagcgctcttacaagcaaccacactcccatcagaacctatcacttggagctctgaagggcacacaaca |
27432708 |
T |
|
| Q |
203 |
ttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaacccat |
284 |
Q |
| |
|
|| || ||| |||||||||| |||| |||||| ||| ||||||| |||| |||||||| | |||||||||||| |||| |
|
|
| T |
27432709 |
ttaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccat |
27432790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 284
Target Start/End: Complemental strand, 27444101 - 27443820
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
|||| |||||| |||||||||||||| | || || ||||||| ||||||||||| || | ||||||||| ||| | ||||| |||||||| |||||| |
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|
| T |
27444101 |
tatcgtcgtaagcatagctataagcacccgggcactggttcttgaaaaccatagaatagtctgtgggtggacatttttcttcggtattgtaatctccacg |
27444002 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcg |
202 |
Q |
| |
|
||||||||||| |||| ||| ||||||| ||||| || |||||||||| |||| |||||| |||| | ||||| || || | ||||||||| | |
|
|
| T |
27444001 |
acaacaatatttatcttcatttaaagccaaacaagcgctcttacaagcaaccacactcccatcagtacctatcacttggagctctgaaggacacacaaca |
27443902 |
T |
|
| Q |
203 |
ttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaacccat |
284 |
Q |
| |
|
||||| ||| |||||||||| |||| |||||| ||| ||||||| |||| |||||||| | |||||||||||| |||| |
|
|
| T |
27443901 |
ttgatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaatccat |
27443820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 27220762 - 27221038
Alignment:
| Q |
3 |
tatcatcgtaaacatagctataagcatcaggacattggttctcaaaaaccatagagtaatttgtgggtgggcatgtcgcttcgctattgtaacgtccacg |
102 |
Q |
| |
|
|||| |||||| |||||||||||||| | || |||||||||| |||| ||||||||| ||||||||||| ||| | |||| ||||| || |||||| |
|
|
| T |
27220762 |
tatcgtcgtaagcatagctataagcaccggggcattggttcttgaaaatcatagagtagtttgtgggtggacatttttcttcagtattgaaatctccacg |
27220861 |
T |
|
| Q |
103 |
acaacaatattgatctgtattaaaagccatgcaagcacttttacaagcaatgacacctgcatcagaacctcttacttgaagttccgggggacacacatcg |
202 |
Q |
| |
|
||||||||||| |||| ||| ||||||| |||||||| ||||| ||||| |||| |||||| ||| | ||||| || || | || |||||| | |
|
|
| T |
27220862 |
acaacaatatttatcttcatttaaagccaaacaagcactcttacaggcaatcacactcccatcagtaccaataacttggagctctgaagggcacacaaca |
27220961 |
T |
|
| Q |
203 |
ttgatattcgctggacaactagaggctttgcaagggccattcccaccacgtggagttacagatactggcacgttgaa |
279 |
Q |
| |
|
|| || ||| |||||||||| |||| |||||| ||| ||||||| |||| |||||||| | |||||||||||| |
|
|
| T |
27220962 |
ttaatgttccctggacaactggaggttttgcagtcaccactcccaccttgtggcgttacagacattggcacgttgaa |
27221038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 41457964 - 41457923
Alignment:
| Q |
194 |
cacacatcgttgatattcgctggacaactagaggctttgcaa |
235 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| ||||||| |
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|
| T |
41457964 |
cacacatcgttgatattcgcgggacaactcgagggtttgcaa |
41457923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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