View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_18 (Length: 462)
Name: NF9288A_low_18
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 23 - 423
Target Start/End: Original strand, 38359303 - 38359702
Alignment:
| Q |
23 |
atatcatgcaatcagatttacaatgggatcaattcattagaagcaggatcctaaggaacnnnnnnnccagtcgattatcatgtttcttcatctgttttga |
122 |
Q |
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| T |
38359303 |
atatcatgcaatcagatttacaatgggatcagttcattagaagcaggatcctaaggaacaaaaaa-ccagtcaattatcatgtttcgtcatctgttttga |
38359401 |
T |
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| Q |
123 |
ttggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattcgaaatggggaaaatattaacttctggattgattcctggtgtagaga |
222 |
Q |
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| T |
38359402 |
gtggtgctaggcataaatactctactgtgctagaaaatgtgtcttgaaatattggaaatggggaaaatattaacttctggattgattcctggtgtagaga |
38359501 |
T |
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| Q |
223 |
gcctttgacaattgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcattcataattttaagtggagtgtctcctaaga |
322 |
Q |
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| T |
38359502 |
gcctttgacaactgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcattcataattttaagtggagtgtctcctaaga |
38359601 |
T |
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| Q |
323 |
aatcttagttgtttgcccagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaagataagctgatttggaagtcatctcatgat |
422 |
Q |
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| T |
38359602 |
aatcttagtcgtttgcctagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaagataagctgatttggaagccatctcatgat |
38359701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 18526081 - 18525931
Alignment:
| Q |
273 |
gctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtcca |
372 |
Q |
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|||||||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| ||| ||||||| || | | || || ||||| | |||| | |
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| T |
18526081 |
gctactcttgattcttatattcacaattttaggcggcgtgtccctcaagaaatcttaattgcttgcccaattcttcagcaaaaattgaagttggtgtcaa |
18525982 |
T |
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| Q |
373 |
ttcctaattcttacaaggaagataagctgatttggaagtcatctcatgatg |
423 |
Q |
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||||||| |||||||||| |||||||| ||||||||| ||||||||||| |
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| T |
18525981 |
ttcctaacacttacaaggaggataagcttatttggaagcaatctcatgatg |
18525931 |
T |
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