View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_181 (Length: 296)

Name: NF9288A_low_181
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_181
NF9288A_low_181
[»] scaffold0128 (2 HSPs)
scaffold0128 (150-275)||(18554-18679)
scaffold0128 (20-149)||(18871-18999)
[»] chr8 (4 HSPs)
chr8 (185-272)||(13580396-13580485)
chr8 (220-272)||(28376659-28376711)
chr8 (187-272)||(26835636-26835721)
chr8 (200-264)||(22930331-22930395)
[»] chr1 (3 HSPs)
chr1 (187-272)||(8246762-8246847)
chr1 (187-272)||(1240429-1240514)
chr1 (218-272)||(3265538-3265592)
[»] chr6 (3 HSPs)
chr6 (187-272)||(12174322-12174407)
chr6 (223-272)||(10668956-10669005)
chr6 (220-272)||(9815747-9815799)
[»] chr5 (1 HSPs)
chr5 (187-272)||(16570538-16570623)
[»] chr4 (4 HSPs)
chr4 (219-272)||(47059692-47059745)
chr4 (219-272)||(47082057-47082110)
chr4 (218-272)||(12167052-12167106)
chr4 (203-272)||(36071615-36071684)
[»] chr2 (2 HSPs)
chr2 (187-272)||(40876967-40877052)
chr2 (220-272)||(5163794-5163846)
[»] chr7 (3 HSPs)
chr7 (200-272)||(3940706-3940778)
chr7 (200-272)||(9429391-9429463)
chr7 (220-272)||(35812616-35812668)
[»] chr3 (1 HSPs)
chr3 (200-272)||(15670920-15670992)


Alignment Details
Target: scaffold0128 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 150 - 275
Target Start/End: Complemental strand, 18679 - 18554
Alignment:
Q  150 attatttcattatccacataattaataacttaacattaaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  18679 attatttcattatccacataattaataacttaacattaaatatttattttatagaattattcaaagcaagttaaaaagaaatacatgtatataccactaa 18580  T
Q  250 ctaataagtaaaaatattaatttcag 275  Q
    ||||||||||||||||||||||||||    
T  18579 ctaataagtaaaaatattaatttcag 18554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 18999 - 18871
Alignment:
Q  20 ttgcttcaaaccaaattacaatgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgctactcagttcaattccctccttctttgtatca 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  18999 ttgcttcaaaccagattacaatgcaatcatttgttatggtgcttaatctctgtcaggaccgtttttgatactcagttcaattccctccttctttg-atca 18901  T
Q  120 tcaattcttggctttgcaggtttggttacc 149  Q
    ||||||||||||||||||||||||||||||    
T  18900 tcaattcttggctttgcaggtttggttacc 18871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 272
Target Start/End: Original strand, 13580396 - 13580485
Alignment:
Q  185 ttaaatatatatttt--atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||| |||||||||  ||||||||| ||| ||| | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  13580396 ttaaaaatatattttcaatagaattaatcaaagcgaattaaaaagaaatatatttatataatactaactattaagtaaaaataataattt 13580485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 28376711 - 28376659
Alignment:
Q  220 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 28376659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 26835636 - 26835721
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||  ||||||||| | | || || ||||||||||||| || |||||  ||||||||| |||||||||||| ||||||    
T  26835636 aaatatattttcaatagaattaataaaagaaaattaaaaagaaatatatttatattgtactaactattaagtaaaaataataattt 26835721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 22930395 - 22930331
Alignment:
Q  200 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaat 264  Q
    ||||||||| ||| ||| | ||||||||| ||| || |||||| ||||||||| |||||||||||    
T  22930395 atagaattaatcaaagcgaattaaaaagatatatatctatatagtactaactattaagtaaaaat 22930331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 8246762 - 8246847
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||  ||||||||| ||| | ||| ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  8246762 aaatatattttcaatagaattaatcaaatcaaattaaaaagaaatatatctatatagtactaactattaagtaaaaataataattt 8246847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 1240514 - 1240429
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||  ||||||||| ||| |||   ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  1240514 aaatatattttcaatagaattaatcaaagcggattaaaaagaaatatatttatatagtactaactactaagtaaaaataataattt 1240429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 3265538 - 3265592
Alignment:
Q  218 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||||||||| || ||| || ||||||||| |||||||||||| ||||||    
T  3265538 agttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattt 3265592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Complemental strand, 12174407 - 12174322
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||| ||| ||||| ||| | | | ||||||||||||| || |||||| ||||||||| |||||||||||| ||||||    
T  12174407 aaatatatttttaatataattaatcaaaacgaattaaaaagaaatatatctatatagtactaactactaagtaaaaataataattt 12174322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 10668956 - 10669005
Alignment:
Q  223 aaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||| ||| || |||||| |||||||||||||||||||||| ||||||    
T  10668956 aaaagatatatatctatataatactaactaataagtaaaaataataattt 10669005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 9815747 - 9815799
Alignment:
Q  220 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||||||| || |||||| || |||||| |||||||||||| ||||||    
T  9815747 ttaaaaagaaatatatctatatagtattaactactaagtaaaaataataattt 9815799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 16570538 - 16570623
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||| ||||||||| ||| ||  | ||||||||||||| || |||||  ||| |||||||||||||||||| ||||||    
T  16570538 aaatatatttttaatagaattaatcaaagtgaattaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattt 16570623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Complemental strand, 47059745 - 47059692
Alignment:
Q  219 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47059745 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47059692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 47082057 - 47082110
Alignment:
Q  219 gttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||||||||| || | |||| |||||||||||||||||||||| ||||||    
T  47082057 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 47082110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 12167106 - 12167052
Alignment:
Q  218 agttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||| |||||||| ||||||||||||| || |||| ||||||| ||||||    
T  12167106 agttaaaaataaatacatatatatactactaattactaagcaaaaataataattt 12167052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 36071615 - 36071684
Alignment:
Q  203 gaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||| ||| || || ||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  36071615 gaattaatcaaagaaaattaaaaagaaatatatctatatagtactaactatcaagtaaaaataataattt 36071684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 40876967 - 40877052
Alignment:
Q  187 aaatatatattttatagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    |||||||| ||  ||||||||| ||  | ||||||||||||||||| || |||||| |||||||||  ||||||||||| ||||||    
T  40876967 aaatatattttcaatagaattaatccaaacaagttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattt 40877052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 5163846 - 5163794
Alignment:
Q  220 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||| ||| || |||||| ||||||||| |||||||||||| ||||||    
T  5163846 ttaaaaagatatatatttatatagtactaactactaagtaaaaataataattt 5163794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 3940706 - 3940778
Alignment:
Q  200 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||| ||| || || ||||||||||||| || |||||  |||| |||| |||||||||||| ||||||    
T  3940706 atagaattaatcaaagtaaattaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 9429391 - 9429463
Alignment:
Q  200 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||| ||| | | || |||||||||||| || |||||| ||||||||| ||| |||||||| ||||||    
T  9429391 atagaattaatcaaaacgagataaaaagaaatatatttatataatactaactattaaataaaaatactaattt 9429463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 35812668 - 35812616
Alignment:
Q  220 ttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||||||| || |||||| |||||| || |||||||||||| ||||||    
T  35812668 ttaaaaagaaatatatctatatagtactaattattaagtaaaaataataattt 35812616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 15670992 - 15670920
Alignment:
Q  200 atagaattattcagagcaagttaaaaagaaatacatgtatatactactaactaataagtaaaaatattaattt 272  Q
    ||||||||| ||| | ||| ||||||||||||| || |||||  || |||||| |||||||||||| ||||||    
T  15670992 atagaattaatcaaaacaaattaaaaagaaatatatctatattgtaataactactaagtaaaaataataattt 15670920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University