View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_19 (Length: 453)
Name: NF9288A_low_19
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 152 - 448
Target Start/End: Complemental strand, 29280376 - 29280091
Alignment:
| Q |
152 |
ggttgttcctatactcaatcaaaaagaataaaagtaaccaaattagtaccatggtccaagaacttatgttgactcactaatggccattttacaactgtcg |
251 |
Q |
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| T |
29280376 |
ggttgttcctatactcaatcaaaaagaataaaagtaaacaaattagtaccatggtccaagaacttatgttgactcactaatgaccattttacaactgtcg |
29280277 |
T |
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| Q |
252 |
tcaaagaattttgaaccattgtttaaattgttagcaatcgcaattgcagtcgcaatataaaaagttttgagg--tctgcaacggtatcacaaccattaga |
349 |
Q |
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| T |
29280276 |
ttaaagaattttgaaccattgtttaaattgttggcaatcg------------caatataaaaggttttgaggtctctgcaatggtatcacaaccattaga |
29280189 |
T |
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| Q |
350 |
ccacatcagctgccttttttatggtacaaaggtttgcagcgtaaccacaatttaaaatcatgatttaaactgtgttccaaataattatatgattaaaat |
448 |
Q |
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| T |
29280188 |
ccacatcagctg-cttttttatggtacaaaggtttgcagcctaaccacaatttaaaatcatgatttaaactttgttccaaataattataagattaaaat |
29280091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29280527 - 29280492
Alignment:
| Q |
1 |
atccacaaaaagcacacatggttctggtggtttagg |
36 |
Q |
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| T |
29280527 |
atccacaaaaagtacacatggttctggtggtttagg |
29280492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 409
Target Start/End: Complemental strand, 42945084 - 42945056
Alignment:
| Q |
381 |
gtttgcagcgtaaccacaatttaaaatca |
409 |
Q |
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| T |
42945084 |
gtttgcagcgtaaccacaatttaaaatca |
42945056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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