View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_190 (Length: 288)

Name: NF9288A_low_190
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_190
NF9288A_low_190
[»] chr1 (4 HSPs)
chr1 (4-267)||(29467152-29467415)
chr1 (36-269)||(29452676-29452909)
chr1 (35-266)||(29423804-29424035)
chr1 (52-269)||(29442684-29442901)
[»] chr2 (12 HSPs)
chr2 (35-268)||(14550910-14551143)
chr2 (35-137)||(12005616-12005718)
chr2 (35-136)||(12018381-12018482)
chr2 (41-137)||(11986979-11987075)
chr2 (39-134)||(12012047-12012142)
chr2 (213-268)||(8572827-8572882)
chr2 (35-93)||(8579035-8579093)
chr2 (38-92)||(9365188-9365242)
chr2 (39-93)||(10336378-10336432)
chr2 (52-89)||(8577936-8577973)
chr2 (36-92)||(7612487-7612543)
chr2 (216-268)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (49-89)||(55718336-55718376)
[»] chr8 (1 HSPs)
chr8 (35-86)||(41966263-41966314)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 29467415 - 29467152
Alignment:
Q  4 atggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgg 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29467415 atggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattga 29467316  T
Q  104 tggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467315 tggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttaga 29467216  T
Q  204 gaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467215 gaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 29467152  T

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Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 29452909 - 29452676
Alignment:
Q  36 aatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccg 135  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactg 29452810  T
Q  136 aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt 235  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29452809 aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt 29452710  T
Q  236 gtcgaaggattaagaaacgattgagggaattttg 269  Q
    |||||||||||||| |||||||||||||||||||    
T  29452709 gtcgaaggattaaggaacgattgagggaattttg 29452676  T

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Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 35 - 266
Target Start/End: Original strand, 29423804 - 29424035
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 134  Q
    ||||||||||   ||| ||||| |||||||||| |||| |||| ||||||||||||||| |  ||| || | | | ||||||||||||||||||||| ||    
T  29423804 gaatagggagggaagggataatgcgatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatcc 29423903  T
Q  135 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 234  Q
    || |||||||||||||||||||| |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  29423904 gaccagagagatgaagttgttggagcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttg 29424003  T
Q  235 tgtcgaaggattaagaaacgattgagggaatt 266  Q
    ||||||||||||||| ||||||||| ||||||    
T  29424004 tgtcgaaggattaaggaacgattgaaggaatt 29424035  T

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Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 52 - 269
Target Start/End: Complemental strand, 29442901 - 29442684
Alignment:
Q  52 ataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 151  Q
    |||||||| ||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29442901 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 29442802  T
Q  152 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 251  Q
    || ||||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29442801 tgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaagga 29442702  T
Q  252 acgattgagggaattttg 269  Q
    |||||||||| |||||||    
T  29442701 acgattgaggaaattttg 29442684  T

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Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 35 - 268
Target Start/End: Original strand, 14550910 - 14551143
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 134  Q
    |||||||||||| ||| ||||| |||||||||||||||||||| ||||| ||||| ||| || ||||||   | ||| ||||||| ||||||||||||||    
T  14550910 gaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgttacatgaacc 14551009  T
Q  135 gaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttg 234  Q
    || |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||    
T  14551010 gagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagagattggacttg 14551109  T
Q  235 tgtcgaaggattaagaaacgattgagggaatttt 268  Q
    ||||||||||||||| ||| ||||||||||||||    
T  14551110 tgtcgaaggattaaggaacaattgagggaatttt 14551143  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 137
Target Start/End: Complemental strand, 12005718 - 12005616
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 134  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||| || | |||| |||||||||||| |||||||||||||||||    
T  12005718 gaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T
Q  135 gaa 137  Q
    |||    
T  12005618 gaa 12005616  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 12018482 - 12018381
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 134  Q
    |||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||| ||   |||| |||||||||||| |||||||||||||||||    
T  12018482 gaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 12018383  T
Q  135 ga 136  Q
    ||    
T  12018382 ga 12018381  T

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Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 137
Target Start/End: Complemental strand, 11987075 - 11986979
Alignment:
Q  41 ggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaa 137  Q
    |||||| ||| |||||||||||||||||| ||||||| ||||||||||||||| ||   |||| |||||||||||| ||||||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgaa 11986979  T

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Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 134
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  39 agggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 134  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||| ||| || ||   || | |||||||||||  |||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 268
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
Q  213 gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 268  Q
    ||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||    
T  8572882 gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt 8572827  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 8579093 - 8579035
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgatt 93  Q
    |||| ||||||| ||| ||||  |||||||||||||||||||| |||||||||||||||    
T  8579093 gaatggggagataagggataactcgatgtttacggatgttagggttccagaaagcgatt 8579035  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 9365188 - 9365242
Alignment:
Q  38 tagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgat 92  Q
    |||| |||| ||| || ||||||||||||||||||||||| ||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaaagcgat 9365242  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 10336378 - 10336432
Alignment:
Q  39 agggagattaggaataatccgatgtttacggatgttaggattccagaaagcgatt 93  Q
    |||||||| ||| ||||||||||||||||||||| ||||||| ||||| ||||||    
T  10336378 agggagataagggataatccgatgtttacggatggtaggattacagaatgcgatt 10336432  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 8577973 - 8577936
Alignment:
Q  52 ataatccgatgtttacggatgttaggattccagaaagc 89  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  8577973 ataaaccgatgtttacggatgttaggattccataaagc 8577936  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 7612487 - 7612543
Alignment:
Q  36 aatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgat 92  Q
    ||||||||||||||| ||   || |||||||||||||||||| ||||| ||||||||    
T  7612487 aatagggagattagggatggccctatgtttacggatgttagggttccataaagcgat 7612543  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
Q  216 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 268  Q
    |||||||| |||| | |||||||||||||||||| | || |||||||||||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt 9292751  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 55718336 - 55718376
Alignment:
Q  49 ggaataatccgatgtttacggatgttaggattccagaaagc 89  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  55718336 ggaataatccgatgtttacggatcgtaggattccagaaagc 55718376  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 41966314 - 41966263
Alignment:
Q  35 gaatagggagattaggaataatccgatgtttacggatgttaggattccagaa 86  Q
    |||||||||||  ||| |||||||||||||||| ||||||||| ||||||||    
T  41966314 gaatagggagaaaagggataatccgatgtttacagatgttagggttccagaa 41966263  T

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