View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_2 (Length: 983)
Name: NF9288A_low_2
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_2 |
 | |
|
| [»] chr3 (20 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 926; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 926; E-Value: 0
Query Start/End: Original strand, 22 - 983
Target Start/End: Original strand, 27004691 - 27005652
Alignment:
| Q |
22 |
caaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatatggcttct |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004691 |
caaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatatggcttct |
27004790 |
T |
|
| Q |
122 |
ctatgccacactcccatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaatatctggtaatgctcatgctt |
221 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004791 |
ctatgccacactcacatatccttgatcgcagattcattccccttcctccaacaattggatatcagtttccctaaaacaatatctggtaatgctcatgctt |
27004890 |
T |
|
| Q |
222 |
attacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaact |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004891 |
attacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaact |
27004990 |
T |
|
| Q |
322 |
atttgtcaactgtaagtttctacaacaagtttttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttg |
421 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27004991 |
atgtgtcaactgtaagtttctacaacaagtttttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttg |
27005090 |
T |
|
| Q |
422 |
aattctttctctgttagtaattttcaggaagaaaagggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtc |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005091 |
aattctttctctgttagtaattttcaggaagcaaatggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtc |
27005190 |
T |
|
| Q |
522 |
ttgatttctctttctcacgtatttctgatttcatgctttgctctttagcacttgaatctcttcctctaaacaacctcgttctccgtggttgtttggatta |
621 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
27005191 |
ttgatttctctttctcacgtatttctgatctcatgctttgctctttagcacttgaatctcttcctctaaacaaactcgttctccatggttgtttggatta |
27005290 |
T |
|
| Q |
622 |
tacatattatggtatctattatctactatcaaggtctcgttttctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgac |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
27005291 |
tacatattatggtatctattatctactatcaaggtctcgttttctacagcatctagatcttcaatttgcaacttttttgaatgatcagggtatcactgac |
27005390 |
T |
|
| Q |
722 |
ttgtctgtttatcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgc |
821 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005391 |
ttgtctgtttatcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgc |
27005490 |
T |
|
| Q |
822 |
tcacagagatcagaatggagtcagcagatattggaaaaagtctgtcagtggatttggatttggattttgtatacaatcaagtgaagtctctctatttggc |
921 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005491 |
tcacagagatcagaatggagtcagcagatattggaaaaagtctgtcagtggatttggatttggattttgtatacaatcaagtgaagtctctctatttggc |
27005590 |
T |
|
| Q |
922 |
tgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27005591 |
tgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
27005652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 354 - 983
Target Start/End: Original strand, 36810275 - 36810905
Alignment:
| Q |
354 |
ttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttagtaattttcaggaaga |
453 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||| ||||||| | |||||||||||||||||||||| ||||| ||| | ||| |||| |
|
|
| T |
36810275 |
ttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctct--tagaatctttacagaagc |
36810372 |
T |
|
| Q |
454 |
aaagggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatttc |
553 |
Q |
| |
|
|| | | |||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||| ||||| ||| | |||||||||||| |
|
|
| T |
36810373 |
aattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtctttttcatgcatttctgatttc |
36810472 |
T |
|
| Q |
554 |
atgctttgctctttagcacttgaatctcttcctctaaacaacctcgttctccgtggttgtttggattatacatattatggtatctattatctactatcaa |
653 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| | | | || | |||| | ||| || ||||||||||| |||| |||| ||||||||| |||| |
|
|
| T |
36810473 |
ttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaa |
36810572 |
T |
|
| Q |
654 |
ggtctcgttttctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctat |
753 |
Q |
| |
|
|| ||| |||||||||| ||||||||||||| |||||| ||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
36810573 |
agtgtcgatttctacagcttctagatcttcaagatgcaaagtttttgaatgatcagcgtatcaatgagttgtctgtatatcttgctgatttggtgtctat |
36810672 |
T |
|
| Q |
754 |
aaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgctcacagagatcagaatggagtcagcagatatt |
853 |
Q |
| |
|
|||| ||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| || ||||||| | |||||||||||||||||| || |||| |
|
|
| T |
36810673 |
aaacgtcagcggttgttaccagctcacctattcatccttctttgcactccttaggaactttcatttgctcgctgagatcagaatggagtcaacaaatata |
36810772 |
T |
|
| Q |
854 |
ggaaa------aagtctgtcagtggatttggatttggattttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaag |
947 |
Q |
| |
|
||||| || | ||||||||||||||||| | | |||||| ||||||||||||||||| |||||||| | ||| ||||||| |||| |||| |
|
|
| T |
36810773 |
ggaaatggctcaaaaccgtcagtggatttggattcag---tagtataccatcaagtgaagtctctccatttggctaaaaatttacgtttgcaagaagaag |
36810869 |
T |
|
| Q |
948 |
atattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
| || || ||||||||||| |||||||||||||||| |
|
|
| T |
36810870 |
acatcaagatgtttgctttcatgttccctaacatgc |
36810905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 464 - 819
Target Start/End: Complemental strand, 36876303 - 36875948
Alignment:
| Q |
464 |
aataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatttcatgctttgct |
563 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||| | |||||||||||| ||||||||| |
|
|
| T |
36876303 |
aataaaattactccatactttgttgattcattgtggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgct |
36876204 |
T |
|
| Q |
564 |
ctttagcacttgaatctcttcctctaaacaacctcgttctccgtggttgtttggattatacatattatggtatctattatctactatcaaggtctcgttt |
663 |
Q |
| |
|
|| |||||||||| |||||||| | | ||| || ||||||| |||||| || |||||||||||||| | |||||| ||| | |||| |||| || |
|
|
| T |
36876203 |
ctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttccattatacatattataggatctatcgtctgttgtcaaagtcttcatt |
36876104 |
T |
|
| Q |
664 |
tctacagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctataaacctcagc |
763 |
Q |
| |
|
|||||| ||||||||||||||| ||||| |||||||||||||| |||||| ||| |||| || | ||||| |||||||||||||||||| ||| |
|
|
| T |
36876103 |
tctacaacatctagatcttcaagctgcaatgtttttgaatgatcatcgtatcaatgagttgtgtgcatttcttggcgatttggtgtctataaacgtcaat |
36876004 |
T |
|
| Q |
764 |
ggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtccttt |
819 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
36876003 |
ggttgtgacaagctcaccaatgcagccttctttgcacttcttaggaattgtccttt |
36875948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 77 - 432
Target Start/End: Complemental strand, 33397618 - 33397263
Alignment:
| Q |
77 |
actaaatccaccttgacctctctcacatgttccaatatggcttctctatgccacactcccatatccttgatcgcagattcattccccttcctccaacaat |
176 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| || | ||||||| ||| ||| ||||||||| || || ||||| ||||| ||||||||||||| |
|
|
| T |
33397618 |
actaaatcaaccttgacctctctcacttgttccaacatcggctctctataccatactgacatatccttcattgccgattccttccctttcctccaacaat |
33397519 |
T |
|
| Q |
177 |
tggatatcagtttccctaaaacaatatctggtaatgctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
276 |
Q |
| |
|
|||||||||||| |||||||| ||| | | | | | |||| | |||||| | ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33397518 |
tggatatcagttaccctaaaataatcaccaatgacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggttaa |
33397419 |
T |
|
| Q |
277 |
tctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtttttatgttcgattgccaattccta |
376 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||| | | | | | |||||| |||||||||| | | |||||||| | ||||| || ||| |
|
|
| T |
33397418 |
tctctctggtcatttctacgttaatgactccaccttttttctattgtgtatgaactgtgtgtttctacaagagttggttatgttccaatgccatttgcta |
33397319 |
T |
|
| Q |
377 |
acacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctc |
432 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
33397318 |
tcacatgatggtcttgcttctgcaatatgtcagagaccaactttgaattctttctc |
33397263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 668 - 856
Target Start/End: Original strand, 33714423 - 33714611
Alignment:
| Q |
668 |
cagcatctagatcttcaatatgcaacctttttgaatgatcagggtatcactgacttgtctgtttatcttgctgatttggtgtctataaacctcagcggtt |
767 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||| | ||| ||| ||| || | ||||| |||||| ||||||||||| | || |||| |
|
|
| T |
33714423 |
cagcatctagatcttcaatgtgcaaagtttttgaatgatcagcatttcaatgagctgtgtgcatttcttggtgatttagtgtctataaatgtgagtggtt |
33714522 |
T |
|
| Q |
768 |
gtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgctcacagagatcagaatggagtcagcagatattgga |
856 |
Q |
| |
|
|| || | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| |
|
|
| T |
33714523 |
gtgacgacctcaccaattcagccttctttgcactccttaggaactgtcctttgctcactgagatcagaatggagtcaacaaatattgga |
33714611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 733 - 856
Target Start/End: Original strand, 33708653 - 33708776
Alignment:
| Q |
733 |
tcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctttgctcacagagatc |
832 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33708653 |
tcttggtgatttagtgtctataaatgtgagtggttgtgacaagctcaccaattcagccttctttgcactccttaggaactgtcctttgctcactgagatc |
33708752 |
T |
|
| Q |
833 |
agaatggagtcagcagatattgga |
856 |
Q |
| |
|
|||||||||||| || |||||||| |
|
|
| T |
33708753 |
agaatggagtcaacaaatattgga |
33708776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 86 - 314
Target Start/End: Complemental strand, 36876695 - 36876458
Alignment:
| Q |
86 |
accttgacctctctcacatgttccaatatggcttctctatgccacactcccatatccttgatcgcagattcattccccttcctccaacaattggatatca |
185 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||||| ||| ||| ||||||||| || || |||| || || |||||||||||| ||||||||| |
|
|
| T |
36876695 |
accttgacctctctcacatgttccaacattggctctctataccatactgacatatccttcattgctcattcttttcctttcctccaacaactggatatca |
36876596 |
T |
|
| Q |
186 |
gtttccctaaaacaatatctggtaatg---------ctcatgcttattacaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaa |
276 |
Q |
| |
|
||||||| ||||||||| | ||||||| || | ||||| | ||||||||| ||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
36876595 |
gtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaa |
36876496 |
T |
|
| Q |
277 |
tctctctggtcattcctactttaatgactctttgtttt |
314 |
Q |
| |
|
| |||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
36876495 |
tttctctggtaatttctacattaatgactcgttgtttt |
36876458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 33708173 - 33708357
Alignment:
| Q |
253 |
gctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtt |
352 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||| |||||||| | |||||||| ||||||||||| |||| | | ||||| |||||||| ||| | || |
|
|
| T |
33708173 |
gctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgttttttcagctatgtatgaactgcaagtttctccaagaggtg |
33708272 |
T |
|
| Q |
353 |
tttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgtta |
437 |
Q |
| |
|
|||||||| | || | | | ||||||||| || ||||||||||||||||| ||||||||| | ||| | |||||| ||||||| |
|
|
| T |
33708273 |
cttatgttcaactgtcgttccataacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgtta |
33708357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 253 - 429
Target Start/End: Original strand, 33714039 - 33714215
Alignment:
| Q |
253 |
gctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaactatttgtcaactgtaagtttctacaacaagtt |
352 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| ||||||| | |||||||| ||||||||||| |||| | | ||||| |||||||| || | || |
|
|
| T |
33714039 |
gctttcagaactccgtaaggttaatctctctggtaattcctatgtaaatgactcgttgttttttcagctatgtatgaactgcaagtttctcaaagaggtg |
33714138 |
T |
|
| Q |
353 |
tttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattcttt |
429 |
Q |
| |
|
|||||| | | |||| | | ||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
33714139 |
gttatgtacaaatgccgttccataacacatgctggtattgcttctgcaatctaccagagaccgactttaagttcttt |
33714215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 719 - 983
Target Start/End: Complemental strand, 33396988 - 33396724
Alignment:
| Q |
719 |
gacttgtctgtttatcttgctgatttggtgtctataaacctcagcggttgtcaccagctcaccaactcagccttctttgcactccttaggaactgtcctt |
818 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||| |||||| || |||||| ||| ||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
33396988 |
gacttgtgtgtatttcttggtgatttggtgtctataaacctcaatggttgtgacaagctcaacaatgcagccttatttgcactccttaagaattgtcctt |
33396889 |
T |
|
| Q |
819 |
tgctcacagagatcagaatggagtcagcagatattggaa------aaagtctgtcagtggatttggatttggattttgtatacaatcaagtgaagtctct |
912 |
Q |
| |
|
|||| || |||||| ||||||||| || | ||||||| ||| | || | || ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
33396888 |
tgctgactgagatccacatggagtcaacaaaaattggaattggttcaagaccatctgcgg---tggatttgg---ttgtataccatcaagtgaagtctct |
33396795 |
T |
|
| Q |
913 |
ctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
| |||||||| ||||| ||| ||| |||||||||| || | ||||||| |||| ||||| ||||| |||| |
|
|
| T |
33396794 |
ccatttggcttacaattcacaattgcaagatgaagacatcaccatgttttcttttatgtttcctaatatgc |
33396724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 888 - 983
Target Start/End: Complemental strand, 36875882 - 36875787
Alignment:
| Q |
888 |
ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||| ||||| ||| |||| |||||||||| || |||||||||||||| | ||| |||||||||| |
|
|
| T |
36875882 |
ttgtataccatcaactgaagtctctccatttggctaacaattcacatttgcaagatgaagacatcaacatgtttgcttttacgtttcctaacatgc |
36875787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 37579953 - 37580008
Alignment:
| Q |
225 |
acaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctc |
280 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
37579953 |
acaatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaatctc |
37580008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 775 - 858
Target Start/End: Original strand, 37580498 - 37580581
Alignment:
| Q |
775 |
gctcaccaactcagccttctttgcactccttaggaactgtcctttgctcacagagatcagaatggagtcagcagatattggaaa |
858 |
Q |
| |
|
||||||||| | ||||| ||||||||||||| |||||||||||| ||||| ||||||| |||||||||| ||| |||||||| |
|
|
| T |
37580498 |
gctcaccaattttgccttgtttgcactccttaagaactgtcctttactcactgagatcaaaatggagtcaacaggaattggaaa |
37580581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 37579753 - 37579845
Alignment:
| Q |
22 |
caaccacaccaccttccccgtcttagggttgcaaactcttctcaaaaagactactactaaatccaccttgacctctctcacatgttccaatat |
114 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||| |||||||||| || |||| ||| |||||||||||||| || ||||| ||||| |
|
|
| T |
37579753 |
caaccaccccaccttccccgtattagggttgcagactattctcaaaaacaccactatatcatcaaccttgacctctctgacttgttcaaatat |
37579845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 888 - 983
Target Start/End: Original strand, 37580608 - 37580703
Alignment:
| Q |
888 |
ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||| || ||||| ||||||||| || ||||||||||||| |||| ||||| |||| |
|
|
| T |
37580608 |
ttgtataccatcaagtgaagtctctccatttggcttccaattcatgtttgcgagatgaagacatccacatgtttgctttcctgtttcctaatatgc |
37580703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 375 - 433
Target Start/End: Original strand, 37580097 - 37580155
Alignment:
| Q |
375 |
taacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctct |
433 |
Q |
| |
|
||||| |||||||||| ||||||||||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
37580097 |
taacagatgatggtatggcttctgcaatctgccacagaccgactttgacttctttctct |
37580155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 33093050 - 33093107
Alignment:
| Q |
225 |
acaatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctc |
282 |
Q |
| |
|
|||||||| || || ||||| |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
33093050 |
acaatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctc |
33093107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 888 - 972
Target Start/End: Original strand, 33714640 - 33714724
Alignment:
| Q |
888 |
ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgtt |
972 |
Q |
| |
|
||| |||| |||| |||||||||||| |||||||| ||||| || ||||| |||||||| | || || | ||||||||||||||| |
|
|
| T |
33714640 |
ttgaataccatcaggtgaagtctctccatttggctcacaattcaggtttgcaagatgaacacatcaaaaggtttgctttaatgtt |
33714724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 983
Target Start/End: Original strand, 33708805 - 33708900
Alignment:
| Q |
888 |
ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaagatattaacatgtttgctttaatgttccctaacatgc |
983 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||||| || |||| ||||| || | || || | |||||||||||||| ||||| |||| |
|
|
| T |
33708805 |
ttgtataccatcaagtgaagtctctccatttggctcacaattcaggtttacaagataaacacatcaaaagatttgctttaatgtttcctaatatgc |
33708900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 374 - 436
Target Start/End: Original strand, 33093207 - 33093269
Alignment:
| Q |
374 |
ctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgtt |
436 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||||||| | |||| ||||||||||||| |
|
|
| T |
33093207 |
ctaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgtt |
33093269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 18723550 - 18723631
Alignment:
| Q |
240 |
ttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgttttttcaact |
321 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| |||||| || |||| ||||||| || |||||||||||||| |
|
|
| T |
18723550 |
ttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaact |
18723631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 888 - 946
Target Start/End: Complemental strand, 52093097 - 52093039
Alignment:
| Q |
888 |
ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaa |
946 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| | ||||||||| |||||| ||||| |
|
|
| T |
52093097 |
ttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaa |
52093039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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