View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_200 (Length: 286)
Name: NF9288A_low_200
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_200 |
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Alignment Details
Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 45 - 281
Target Start/End: Original strand, 37129099 - 37129341
Alignment:
| Q |
45 |
catgaattaactcacatggatatattttaatcaatttacgtgaaagtgaacatttttttaaggaagaagagcaattttcatcannnnnnnnnaaggatac |
144 |
Q |
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| T |
37129099 |
catgaattaactcacgtggagatattttaattaattcacgtggaagtgaacatttttt-aaggaaaaagagtaattttcatcatttttttttaaggattc |
37129197 |
T |
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| Q |
145 |
atgaaaccgtctaaacacaaaatatattctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt-------nnnnnnnnntg |
237 |
Q |
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| T |
37129198 |
atgaaaccgtctgaacacaaaatatattcccatttgtgctatttacatcctttacttctggttacaccctccaacactaattcaaaaacaaaaaaaaatg |
37129297 |
T |
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| Q |
238 |
ccaaaaacgtcatctcatatttatatttcaaaaaccatattcct |
281 |
Q |
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| T |
37129298 |
ccaaaaacgtcatatcatatttatatttcaaaaaccatattcct |
37129341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 226
Target Start/End: Original strand, 37121080 - 37121166
Alignment:
| Q |
142 |
tacatgaaaccgtctaaacacaaaatat--attctcatttgtgctatttacatcctttatttctggttacaccctgcaacactaatt |
226 |
Q |
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||||| ||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |
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| T |
37121080 |
tacattaaaccgtctcaacacaaaatatatattctcatttgtgctatttatatcctttatttctggttacacccttcaatactaatt |
37121166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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