View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_204 (Length: 284)
Name: NF9288A_low_204
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_204 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 50 - 266
Target Start/End: Complemental strand, 30810542 - 30810322
Alignment:
| Q |
50 |
catgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
|
| Q |
150 |
aaataaatgttga--agagtttttatagtgtaaaagaaatttgaaggtaactatgtatt--tatataatatagtagatgaagaggggtagacatacacat |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
|
| Q |
246 |
ttaatgtgaggggagattgtg |
266 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30810342 |
ttaatgtgaggggagattgtg |
30810322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 30815028 - 30814920
Alignment:
| Q |
37 |
tattaggatatatcatgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattga |
136 |
Q |
| |
|
|||||| ||||||||||| ||||| || ||| || ||| |||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
30815028 |
tattagcatatatcatgtattcata-atctagtcgtgagtcattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattga |
30814931 |
T |
|
| Q |
137 |
agatagaataa |
147 |
Q |
| |
|
| ||| ||||| |
|
|
| T |
30814930 |
aaataaaataa |
30814920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
63 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
148 |
Q |
| |
|
||||||||| ||| || | ||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||| | ||||||| |
|
|
| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 30811365 - 30811333
Alignment:
| Q |
17 |
aacctgtggccatcaaactttattaggatatat |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
30811365 |
aacctgtggccatcaaactttattaggatatat |
30811333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University