View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_213 (Length: 280)
Name: NF9288A_low_213
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_213 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 21951474 - 21951702
Alignment:
| Q |
18 |
gacatctattaaaagattcagaacacactactcattgcagccctgaaatggtcatatttgataccataataaagtaatctgtctttccaaattgaaannn |
117 |
Q |
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| T |
21951474 |
gacatctattaaaagattcagaacacactactcattgcagccctgtaatggtcatatttcataccataataaagtaatctgtctttccaaattgaaattc |
21951573 |
T |
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| Q |
118 |
nnnnaataccttaaatgtataatgtttttcatcaacgttatgcatttaagattcagaacacattactcataacagccctgtaatggtgatctttcctacc |
217 |
Q |
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| T |
21951574 |
ttttaataccttaaatgtataatgtttttcatcaacgttatgcatttaagattcagaacacactactcataacagccctgtaatggtgatctttcctacc |
21951673 |
T |
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| Q |
218 |
ataggaaagtaatacgtctttccaaattg |
246 |
Q |
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| T |
21951674 |
ataggaaagtaatacgtctttccaaattg |
21951702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 21951621 - 21951705
Alignment:
| Q |
30 |
aagattcagaacacactactcattgcagccctgaaatggtcatatttgataccataataaagtaatctgtctttccaaattgaaa |
114 |
Q |
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| T |
21951621 |
aagattcagaacacactactcataacagccctgtaatggtgatctttcctaccataggaaagtaatacgtctttccaaattgaaa |
21951705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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