View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_219 (Length: 279)
Name: NF9288A_low_219
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_219 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21704170 - 21704310
Alignment:
| Q |
1 |
ggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21704170 |
ggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgaga |
21704269 |
T |
|
| Q |
101 |
gatgctttaagttgtcttgaactaagctatacatatttaca |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
21704270 |
gatgctttaagttgtcttgaactaagctatacatatttaca |
21704310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 136 - 279
Target Start/End: Complemental strand, 21704143 - 21704000
Alignment:
| Q |
136 |
tttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacacagtccaagattcattt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
21704143 |
tttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacaaagtccaagattcgttt |
21704044 |
T |
|
| Q |
236 |
tcagataagagccccagattaatcattttttgacagttcattga |
279 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21704043 |
tcagataagagccccagattaataattttttgacagttcattga |
21704000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21622669 - 21622809
Alignment:
| Q |
1 |
ggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgaga |
100 |
Q |
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|||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
21622669 |
ggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttgatgatcacgacgaaggagtgaga |
21622768 |
T |
|
| Q |
101 |
gatgctttaagttgtcttgaactaagctatacatatttaca |
141 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21622769 |
aatgctttgagttgtcttgaactaagctataaatatttaca |
21622809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 21644383 - 21644523
Alignment:
| Q |
1 |
ggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgaga |
100 |
Q |
| |
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|||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||| |||||||||||| |
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| T |
21644383 |
ggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcggcatttgatgatcacgacgaaggagtgaga |
21644482 |
T |
|
| Q |
101 |
gatgctttaagttgtcttgaactaagctatacatatttaca |
141 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21644483 |
aatgctttgagttgtcttgaactaagctataaatatttaca |
21644523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 21715346 - 21715206
Alignment:
| Q |
1 |
ggcgtcttccttaaaagggaaacacaaaagtgagtgggatgttgcactatataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgaga |
100 |
Q |
| |
|
|||||||| ||||||||| || || |||||||||||||||||||||||| ||||| ||||||||||| | | ||| |||||||||||||||||||||||| |
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| T |
21715346 |
ggcgtcttgcttaaaaggaaagcataaaagtgagtgggatgttgcactacataagatgaggaattcatcagcatttgatgatcacgatgaaggagtgaga |
21715247 |
T |
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| Q |
101 |
gatgctttaagttgtcttgaactaagctatacatatttaca |
141 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21715246 |
aatgctttgagttgtcttgaactaagctataaatatttaca |
21715206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 21596735 - 21596826
Alignment:
| Q |
50 |
tataagttgaggaattcagcggaattcgatgatcacgatgaaggagtgagagatgctttaagttgtcttgaactaagctatacatatttaca |
141 |
Q |
| |
|
|||||| ||||||||||| ||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
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| T |
21596735 |
tataagatgaggaattcatcggcatttgatgatcacgatgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttaca |
21596826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 21715374 - 21715514
Alignment:
| Q |
137 |
ttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacacagtccaagattcatttt |
236 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| ||| ||| || || || | |||||||| | ||||||||||||||||| |||||| ||||||| || |
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| T |
21715374 |
ttacatttatcgcagagttctcgtggcacaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctt |
21715473 |
T |
|
| Q |
237 |
cagataagagccccagattaatcattttttgacagttcatt |
277 |
Q |
| |
|
|||||||||| |||| | ||| | |||||||||| |||| |
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| T |
21715474 |
tagataagagcgccaggtgaatattcttttgacagtccatt |
21715514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 21622641 - 21622499
Alignment:
| Q |
137 |
ttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacacagtccaagattcatttt |
236 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| ||| ||| || || || | |||||||| | ||||||||||||||||| |||||| ||||||| || |
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| T |
21622641 |
ttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctt |
21622542 |
T |
|
| Q |
237 |
cagataagagccccagattaatcattttttgacagttcattga |
279 |
Q |
| |
|
|||||| ||| | |||| ||| | |||||||||| |||||| |
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|
| T |
21622541 |
tagataaaagctctagatgaatattcttttgacagtccattga |
21622499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 21644355 - 21644213
Alignment:
| Q |
137 |
ttacatttattgcagagttcatgtggcacaccacccaatgatttagagaattcatcagtaatatctgcatgcttttggaacacagtccaagattcatttt |
236 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| ||| ||| || || || | |||||||| | ||||||||||||||||| |||||| ||||||| || |
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|
| T |
21644355 |
ttacatttatcgcagagttctcgtggcaaaccatccattgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctt |
21644256 |
T |
|
| Q |
237 |
cagataagagccccagattaatcattttttgacagttcattga |
279 |
Q |
| |
|
|||||| ||| | |||| ||| | |||||||||| |||||| |
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|
| T |
21644255 |
tagataaaagctctagatgaatattcttttgacagtccattga |
21644213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 21115518 - 21115447
Alignment:
| Q |
208 |
cttttggaacacagtccaagattcattttcagataagagccccagattaatcattttttgacagttcattga |
279 |
Q |
| |
|
||||||||| | ||||||||||||| |||||| |||||||||| || |||| | |||||||||| |||||| |
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| T |
21115518 |
cttttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgacagtccattga |
21115447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Complemental strand, 23010160 - 23010119
Alignment:
| Q |
89 |
gaaggagtgagagatgctttaagttgtcttgaactaagctat |
130 |
Q |
| |
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||||||||| ||| |||||||||||||||| ||||||||||| |
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|
| T |
23010160 |
gaaggagtgggagttgctttaagttgtcttaaactaagctat |
23010119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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