View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_226 (Length: 276)
Name: NF9288A_low_226
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_226 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 25545148 - 25545417
Alignment:
| Q |
1 |
ttgattccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcggagttttactttgcag |
100 |
Q |
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| T |
25545148 |
ttgattccttcggttccttttctgtgtacctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcggagttttactttgcag |
25545247 |
T |
|
| Q |
101 |
tttgcgtagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaatgatatgccaaggagtctac |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25545248 |
tttgcggagaacaagctgtggattctaactagctcttggtgatagtattgattactttctaaagatttgtgttccttgaatgatatgccaaggagtctac |
25545347 |
T |
|
| Q |
201 |
aactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcatattcttcga |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |
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| T |
25545348 |
aactctttgcatacccttatgttaattccataagtcgcagatacaactcttaatccctcatttttttcga |
25545417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 1154591 - 1154496
Alignment:
| Q |
4 |
attccttcggttccttttctgtgtatctgctgctctctcatattcttgctgccatttggtcttttgtcgggttaaccatcggagttttactttgca |
99 |
Q |
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||||||||||||||||||||||||| || ||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
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| T |
1154591 |
attccttcggttccttttctgtgtaactactgctctatcatattcttgctgccgtttggtcttttgccaggttaaccatcggagttttactttgca |
1154496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 105
Target Start/End: Original strand, 1155121 - 1155160
Alignment:
| Q |
66 |
tttgtcgggttaaccatcggagttttactttgcagtttgc |
105 |
Q |
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| T |
1155121 |
tttgccgggttaactatcggagttttactttgcagtttgc |
1155160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 38041406 - 38041466
Alignment:
| Q |
201 |
aactctttgcatacccttatgttaattccataagtcgcagatacaactcttcatccctcat |
261 |
Q |
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|||||||||||||||| | ||||||||||| |||| || ||||||||||||| |||||||| |
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| T |
38041406 |
aactctttgcatacccctctgttaattccagaagttgcggatacaactcttcgtccctcat |
38041466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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