View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_229 (Length: 275)
Name: NF9288A_low_229
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_229 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 143
Target Start/End: Original strand, 2694214 - 2694353
Alignment:
| Q |
4 |
ggccaggtatgacaccagctgaaaagcttttggagatgtacaataacaaatggggaagcagcattgatcctgtgtttagagagtgttgctactgatcttg |
103 |
Q |
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| T |
2694214 |
ggccaggtatgacaccggctgaaaagcttttggagatgtacaataacaagtggggaagcaacatagattctgtgtttagagagtgttgctactgatcttg |
2694313 |
T |
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| Q |
104 |
ttttctggtgaaggagagaaaatgtagattgaaaataaca |
143 |
Q |
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| T |
2694314 |
tcttctggtgaaggagagaaaatgtagattggaaataaca |
2694353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 2687199 - 2687290
Alignment:
| Q |
7 |
caggtatgacaccagctgaaaagcttttggagatgtacaataacaaatggggaagcagcattgatcctgtgtttagagagtgttgctactga |
98 |
Q |
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| T |
2687199 |
caggtatgacaccagctgataagcttttggagatgtacaacaagaagtggggaagcaacattgatcctgtgtttagagagtgttgctactga |
2687290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 2694408 - 2694445
Alignment:
| Q |
214 |
taaataatatctggaatctatgtccatatgtttgattt |
251 |
Q |
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| T |
2694408 |
taaataatatcaggaatctatgtccatatgtttaattt |
2694445 |
T |
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