View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_233 (Length: 274)
Name: NF9288A_low_233
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_233 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 20426868 - 20427044
Alignment:
| Q |
1 |
gaataaatcagtaattggtttttcatgtttctacctgcgaaatttatgattgtgtttagtaagattttacatttgtttatcaccctgatcataaatatta |
100 |
Q |
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| T |
20426868 |
gaataaatcagtaattggtttttcatgtttttaccttcgaaatttatgatcgtgtttagtaggattttacatttgtttatcaccctgatcataaatatta |
20426967 |
T |
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| Q |
101 |
tcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctgtattattatcaattttactgtagtatt |
177 |
Q |
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| T |
20426968 |
tcaatgacatgaaaaataaagaatgtatttgataatgatgaataatgctgtattattatcaattttatagtagtatt |
20427044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15337966 - 15337909
Alignment:
| Q |
1 |
gaataaatcagtaattggtttttcatgtttctacctgcgaaatttatgattgtgttta |
58 |
Q |
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| T |
15337966 |
gaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15337909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15427031 - 15426974
Alignment:
| Q |
1 |
gaataaatcagtaattggtttttcatgtttctacctgcgaaatttatgattgtgttta |
58 |
Q |
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|||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
15427031 |
gaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15426974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 15518335 - 15518278
Alignment:
| Q |
1 |
gaataaatcagtaattggtttttcatgtttctacctgcgaaatttatgattgtgttta |
58 |
Q |
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|||||||||| ||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
15518335 |
gaataaatcattaattggtttttcatgtttaccccttagagatttatgattgtgttta |
15518278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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