View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_244 (Length: 271)
Name: NF9288A_low_244
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_244 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 9215419 - 9215544
Alignment:
| Q |
8 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaaccttctgcattgtggttcaagaattttctcaaaaaa |
107 |
Q |
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| T |
9215419 |
ttattctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
9215518 |
T |
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| Q |
108 |
gaaactaaacttatgtttcttgtgag |
133 |
Q |
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| T |
9215519 |
gaaactaaacttatgtttcttgtgag |
9215544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
| Q |
203 |
gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
266 |
Q |
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| T |
9215614 |
gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 25158921 - 25158812
Alignment:
| Q |
18 |
agatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaaccttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
117 |
Q |
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| T |
25158921 |
agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc |
25158822 |
T |
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| Q |
118 |
ttatgtttct |
127 |
Q |
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| T |
25158821 |
ttatgtttct |
25158812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 25253914 - 25253970
Alignment:
| Q |
8 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata |
64 |
Q |
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| T |
25253914 |
ttatactgtgagatttggaatgacctttgtagattacaaaaatggtttgaaaagata |
25253970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 25179095 - 25179001
Alignment:
| Q |
8 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaaccttctgcattgtggttcaagaattttctca |
102 |
Q |
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| T |
25179095 |
ttatactgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 25167393 - 25167300
Alignment:
| Q |
8 |
ttattctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaaccttctgcattgtggttcaagaattttctc |
101 |
Q |
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|||| ||||||||||||||||||| || ||||||||||| ||||||||||||||||| | || | || | |||||||||| ||||||||||| |
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| T |
25167393 |
ttatactgtgagatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 30363107 - 30363156
Alignment:
| Q |
15 |
gtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata |
64 |
Q |
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||||| |||||||||| ||||||||||||||| |||| ||||||||||| |
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| T |
30363107 |
gtgaggtttggaatgaactttgtagattacaacaatgacttgaaaagata |
30363156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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