View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_245 (Length: 271)
Name: NF9288A_low_245
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_245 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 29586779 - 29586655
Alignment:
| Q |
141 |
gaagagtgtattgcagactacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttctttttcattaacactcttaaattgttat |
240 |
Q |
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| T |
29586779 |
gaagagtgtattgcagaatacactggt-gtgtgtattgctcgacagcaagtgtcgtgcggctaagcattttccttttcattaacactcttaaattgttat |
29586681 |
T |
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| Q |
241 |
caccccatatgttacatgatcagatt |
266 |
Q |
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| T |
29586680 |
cacctcatatgttacatgatcagatt |
29586655 |
T |
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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29586918 - 29586826
Alignment:
| Q |
1 |
tgctaaagtgcacgaccatatattggcacgacatttttgtcnnnnnnntatatatattagcatgacattgcacgattgtgtgcgttgcttcac |
93 |
Q |
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| T |
29586918 |
tgctaaagtgcacgaccatatattggcacgacatttttgtcaaaaaaatatatatattggcacgacattgcacgattgtgtgcgtggcttcac |
29586826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 44654000 - 44654072
Alignment:
| Q |
140 |
ggaagagtgtattgcagactacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttc |
212 |
Q |
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| T |
44654000 |
ggaagagtgtattgcagaatacactggtcatgtgtattgcacgacagcaagtgtcgtgcggctaagcattttc |
44654072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 47278114 - 47278042
Alignment:
| Q |
140 |
ggaagagtgtattgcagactacactggtcgtgtgtattgcacgacagcaagtgtcgtgcggccaagcattttc |
212 |
Q |
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| T |
47278114 |
ggaagagtgtattgtggaatacactggtcgtgtgtatttcacgacggcaaatgtcgtgcggctaaacattttc |
47278042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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