View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_25 (Length: 442)
Name: NF9288A_low_25
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 229 - 440
Target Start/End: Original strand, 31069460 - 31069671
Alignment:
| Q |
229 |
atgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctcttcttctctttgaattctctatttttcttag |
328 |
Q |
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| T |
31069460 |
atgtcttcttccttcagcaaggtgatgttaagcttcaaaaccattccccctattcttcacttgtgtctcttcttctctttgaattctctatttttcttag |
31069559 |
T |
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| Q |
329 |
ttctcgtgatttgagttttacctttattgtttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaaga |
428 |
Q |
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| T |
31069560 |
ttctcgtgatttgatttttacctttattgtttttctatgaagttgttcttctgctacttgaaagattttgcgggaagagaaatgacggtagaactcaaga |
31069659 |
T |
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| Q |
429 |
ataatctagcca |
440 |
Q |
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| T |
31069660 |
atgatttagcca |
31069671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 31069237 - 31069397
Alignment:
| Q |
6 |
acaatcacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31069237 |
acaaacacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
31069336 |
T |
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| Q |
106 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
166 |
Q |
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| T |
31069337 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
31069397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 37614327 - 37614398
Alignment:
| Q |
358 |
tttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa |
429 |
Q |
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| T |
37614327 |
tttttctatgaagctgttcttctcgtacttcaaagatttggtgggaagagaagtgacggttgaactcaagaa |
37614398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 429
Target Start/End: Original strand, 42440432 - 42440506
Alignment:
| Q |
355 |
ttgtttttctatgaagttgttcttctgctacttgaaagattttgtgggaagagaaatgacggtagaactcaagaa |
429 |
Q |
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|||||||| |||| |||||||||||| ||||| |||||||| |||||||||||| | ||||||||||||||||| |
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| T |
42440432 |
ttgtttttgtatgtagttgttcttctcatacttcaaagatttggtgggaagagaagttacggtagaactcaagaa |
42440506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 11593109 - 11592990
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
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| T |
11593109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11593010 |
T |
|
| Q |
111 |
gaatatcacaagattcatct |
130 |
Q |
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|||| ||||||||| ||||| |
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| T |
11593009 |
gaatttcacaagatgcatct |
11592990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 11645010 - 11645129
Alignment:
| Q |
12 |
acccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
110 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
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| T |
11645010 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11645109 |
T |
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| Q |
111 |
gaatatcacaagattcatct |
130 |
Q |
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|||| ||||||||| ||||| |
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| T |
11645110 |
gaatttcacaagatgcatct |
11645129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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