View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_254 (Length: 268)
Name: NF9288A_low_254
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_254 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 50442075 - 50442336
Alignment:
| Q |
1 |
aaatctcttaaccaagctagaaatttaaacttttattaatgtttggagatataaagttgaaacagtgcaatctaaagttacatattgattatttttcatg |
100 |
Q |
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| T |
50442075 |
aaatctcttaaccaagctagaaatttaaacttttattaatgtttggcgatataaagttgaaacagtgcaatctaaagttacatattgattatttttcatg |
50442174 |
T |
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| Q |
101 |
ttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaac |
200 |
Q |
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| T |
50442175 |
ttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaac |
50442274 |
T |
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| Q |
201 |
tagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
262 |
Q |
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| T |
50442275 |
tagtttttgttgaagagccaagaatcagatgctcaattcctgcctgcgaagcatattcaatc |
50442336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 78 - 262
Target Start/End: Original strand, 50447057 - 50447237
Alignment:
| Q |
78 |
ttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagaga |
177 |
Q |
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| T |
50447057 |
ttacatgttgattattgtttgtgttaattctcagaagggatgg----taagaaactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaa |
50447152 |
T |
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| Q |
178 |
aatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
262 |
Q |
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| T |
50447153 |
aatggatgcatacttgtgcaaactagtttttgctgaagagccaagaatcagatgctcaattcctacttgagaagcatattcaatc |
50447237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 262
Target Start/End: Original strand, 50421965 - 50422104
Alignment:
| Q |
123 |
ggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaag |
222 |
Q |
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|||| |||||||||||||| ||||||| |||| || ||| ||| |||||| | |||| |||| ||||| |||||| ||| | ||||||| |||||||| |
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| T |
50421965 |
ggtagaaaactagaagctaaaagtaaactttgcaacatgctatgctacttataaaaatagatgcatactcaagcaaattagctcttgttgaggagccaag |
50422064 |
T |
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| Q |
223 |
aatcagatgctcaattcctgcctgagaagcatattcaatc |
262 |
Q |
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| T |
50422065 |
aaccaaatgctcaattcccgtccgagaggcatattcaatc |
50422104 |
T |
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