View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_255 (Length: 268)
Name: NF9288A_low_255
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_255 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 30024625 - 30024886
Alignment:
| Q |
7 |
agtagttcattaacctagtacaacaaacattgaaagtaacaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattag |
106 |
Q |
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| T |
30024625 |
agtagttcattaacctagtacaacaaacattgaaagtaacaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattag |
30024724 |
T |
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| Q |
107 |
ccatagaacaagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttaca |
206 |
Q |
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| T |
30024725 |
ccatagaacaagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttaca |
30024824 |
T |
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| Q |
207 |
agcctgtgggcttccataactacccgtgcaacaatccttaggtgagttaaaagcataacaag |
268 |
Q |
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| T |
30024825 |
agcctgtgggcttccataactacccgtgcaacaatactcaggtgagttaaaagcataacaag |
30024886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 45273168 - 45273269
Alignment:
| Q |
115 |
caagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtg |
214 |
Q |
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|||||| ||||||| ||||| |||||| | ||||||||||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||| |
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| T |
45273168 |
caagtagcaatactggtagggtcatcataagcataagagtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtg |
45273267 |
T |
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| Q |
215 |
gg |
216 |
Q |
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|| |
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| T |
45273268 |
gg |
45273269 |
T |
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