View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_256 (Length: 268)
Name: NF9288A_low_256
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_256 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 48932197 - 48932452
Alignment:
| Q |
1 |
tgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgctgcactgaatagcgtgaaaa |
100 |
Q |
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| T |
48932197 |
tgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgctgcactgaatagcgtgaaaa |
48932296 |
T |
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| Q |
101 |
gccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtttggttaaagtttggattttgaaacta |
200 |
Q |
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| T |
48932297 |
gccattttttttcagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtttggttaaagtttggattttgaaacta |
48932396 |
T |
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| Q |
201 |
attgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatg |
256 |
Q |
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| T |
48932397 |
attgcgttactgggtcgttgaagatcttggatttttgaaactctatgttgatgatg |
48932452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 9392465 - 9392211
Alignment:
| Q |
1 |
tgaacaaaagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgctgcactgaatagcgtgaaaa |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9392465 |
tgaacaagagatggaaaaggcttttgagaactgaaagttgaaaaagaagacattaacaaaagcattagagataaaactgctacactgaatagcgtgaaaa |
9392366 |
T |
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| Q |
101 |
gccannnnnnnncagctcccataactgatttcactacgtgggcatatgaaagtttagattttgagaagtgggtttggttaaagtttggattttgaaacta |
200 |
Q |
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| T |
9392365 |
gcca-tttttttcagctcccataactaatttcactatgtgggcatatgaaatcaacgattttgagaagtggg-ttggttaaagtttggattttgaaacta |
9392268 |
T |
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| Q |
201 |
attgcgttactgggtcgttgaagatcttggatttttgaacctctatgttgatgatgt |
257 |
Q |
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||| |||| |||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
9392267 |
tttgtgttaatgggtcattgaagatcttggatttttgaaactctatgttgatgatgt |
9392211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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