View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9288A_low_261 (Length: 265)
Name: NF9288A_low_261
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_261 |
 | |
|
| [»] scaffold0182 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 20)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 21792118 - 21792369
Alignment:
| Q |
8 |
tggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21792118 |
tggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaaaactgaaagcattctgaaagatctgcacaaaaagattgccgataacat |
21792217 |
T |
|
| Q |
108 |
tgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttg |
207 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21792218 |
tgatacgctgaaggatcgttttagcgatgatgttttaactttaacccgcaagtctcttgacggctttggtagcctcgaagaaaagctgtcatggatattg |
21792317 |
T |
|
| Q |
208 |
ttcgtggatggatgttctttgttgcatatcttggagagttggaagcattttg |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21792318 |
ttcgtggatggatgttctttgttgcatatcttggagaaatggaagcattttg |
21792369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 21788334 - 21788572
Alignment:
| Q |
6 |
tttggagttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataac |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | ||||| | |||||||||||||||||||| |||||| |
|
|
| T |
21788334 |
tttgaagttaggagagaagtacaagcttatgtgggcagcaaaatacatcgaaaacactggacacattccagaggatctgcacaaaaagattgcagataac |
21788433 |
T |
|
| Q |
106 |
attgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgt |
205 |
Q |
| |
|
|||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
21788434 |
attgatgaactgaagggtcattttggcgacgatgttttaactttaactggcaagtctcttgaaggctttggaagcctcgaagaaaagctgtcgtggatgt |
21788533 |
T |
|
| Q |
206 |
tgttcgtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
21788534 |
tgttcgtggatggatgttctttgttgtatatcttagaga |
21788572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 21681760 - 21681993
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || ||||| ||||||| ||||| ||||||||||| |
|
|
| T |
21681760 |
agttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacactggaagcattcaaaaggatctatacaaaaaaattgctgataacattga |
21681859 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| ||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||| | ||||||||||||||| |
|
|
| T |
21681860 |
tgaattgaagggccattttagcgacgatgttttaactttaaccggcgagtctcttgaaggctatcatagccttgaagaaaagttatcatggatgttgttc |
21681959 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |
|
|
| T |
21681960 |
gtggatggatgttctttgctacatatcttggaga |
21681993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 15713741 - 15713964
Alignment:
| Q |
19 |
gagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatgatctga |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| | || ||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
15713741 |
gagaagtacaagcttatgtgggcggcaaaatacatcaaaaacactggaagcattctagaggaactgcacaaaaagattgctgataacattgatgaactga |
15713840 |
T |
|
| Q |
119 |
agggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtggatgg |
218 |
Q |
| |
|
|| |||||||||| || |||||||||||||||||||| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15713841 |
agtgtcattttagtgacgatgttttaactttaaccggaaagtcacttcaaggatttggtagcctagaagaaaagctgtcatggatgttgttcgtggatgg |
15713940 |
T |
|
| Q |
219 |
atgttctttgttgcatatcttgga |
242 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
15713941 |
atgctctttgctgcatatcttgga |
15713964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 21623303 - 21623534
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
21623303 |
agttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacaccagaaaagttcagaaggatatgcacaacaagattgctgataatattga |
21623402 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
21623403 |
tgaactgaagggtcattttagtgacgatgttttaactttaaccggaaagtctcttgaaggctttggtagcattaaagaaaagctgtcgtggatgttgttc |
21623502 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttgga |
242 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |
|
|
| T |
21623503 |
gtggatggatgttctttgctgcatatcatgga |
21623534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 21646856 - 21647090
Alignment:
| Q |
14 |
taggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatga |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||| | ||| ||| |||| ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
21646856 |
taggagagaaatacaagcttatgtgggcagcaaaatacatcaaaaacacgggaagaattaagaaggatctacacaaaaagattgtagataacattgatga |
21646955 |
T |
|
| Q |
114 |
tctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtg |
213 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||| |||| ||||| ||||||||| |
|
|
| T |
21646956 |
actgaagggtcattttagcgacgacgttttaactttgaccggcaagtctcttaaaggcttccgtagccttgaagaaaagttgtcgtggatattgttcgtg |
21647055 |
T |
|
| Q |
214 |
g----atggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
| |||||||||||||| |||||||||| |||| |
|
|
| T |
21647056 |
gatatatggatgttctttgctgcatatcttagaga |
21647090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 21785584 - 21785749
Alignment:
| Q |
79 |
gatctgcacaaaaagattgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggta |
178 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
21785584 |
gatctacacaaaaagattgccgataacattaatgaactgaagggtcattttagcgatgatgttttaactttaaccggccagtctcttgaagactttggta |
21785683 |
T |
|
| Q |
179 |
gcctcgaagaaaagctgtcatggatgttgttcgtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| |
|
|
| T |
21785684 |
gccttgaagaaaagctgtcgtggatgttgtttgtggatggatgttctttgctacatatcttggaga |
21785749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 21992292 - 21992525
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||| | | | | || ||||| |||||||||||| |||||||||||| |
|
|
| T |
21992292 |
agttaggagagaagtacaagcttacgtgggcagcaaaatacatcgaaaatgcaggacttaatccatgcgatctacacaaaaagattatcgataacattga |
21992391 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| ||||||||||||||||| || ||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21992392 |
tgaactgaagggtcattttagtgacgatgttttaactttagctggaaagtctcttgaaggctttggaagcctcgaagaaaagctgtcatggatgttgttc |
21992491 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |
|
|
| T |
21992492 |
gtggatggatgttctttgttgtatatcttagaga |
21992525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 21689523 - 21689756
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||| |||| ||||||||||| |
|
|
| T |
21689523 |
agttaggagagaagtacaagcttatgtgggcagcaaaatacatcaaaaacactggaagcattcagagggatctacacaaaaacattgttgataacattga |
21689622 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
| | ||||||||||||||| || ||||||||||| || ||||| || ||||| |||||||||| ||| || ||||||||||| || ||||||||||| |
|
|
| T |
21689623 |
taaactgaagggtcattttgatgacgatgttttaacattgaccggaaattctctcgaaggctttgatagtcttgaagaaaagctatcgtggatgttgttg |
21689722 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| |
|
|
| T |
21689723 |
gtggatggatgctctttgctttatatcttggaga |
21689756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 21808203 - 21807970
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||||||| |||||| | |||| | ||||| |||||||||||||| |||||||| || |
|
|
| T |
21808203 |
agttaggagagaagtacaagcttatgtggtctgcgaaatacatagaaaacagcggctttattctagaggatctacacaaaaagattgctgataacatcga |
21808104 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21808103 |
tgaactgaagggtcattttggcgacgatgttttaactttaaccggccagtctcttgaaggctttggtagccttgaagaaaagctgtcatggatgttgttc |
21808004 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
||||||||||| |||||| | |||||||||||| |
|
|
| T |
21808003 |
gtggatggatgctctttgctttatatcttggaga |
21807970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 244
Target Start/End: Original strand, 21652253 - 21652412
Alignment:
| Q |
85 |
cacaaaaagattgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcg |
184 |
Q |
| |
|
|||||||||||||||||||| ||| | || || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
21652253 |
cacaaaaagattgccgataaaattaacgaactaaagggtcattttagcgacgatgttttaactttaactggcaagtctcttgaaggctttgatagccttg |
21652352 |
T |
|
| Q |
185 |
aagaaaagctgtcatggatgttgttcgtggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
21652353 |
aagaaaagttgtcgtggatgttgttcgtggatggatgttcgttgctgcatatcttggaga |
21652412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 21704753 - 21704984
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||| | | |||| | || || |||||||||||||| ||||||||||| |
|
|
| T |
21704753 |
agttaggagagaagtacaagcttatgtgggcagcaaaatacatagaaaacaccggacttattccagaggaactacacaaaaagattgcagataacattga |
21704852 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| ||||||| || |||||| ||||||||| |||| || ||||||||||| ||||| |||||| |
|
|
| T |
21704853 |
tgaactgaagggtcgttttagcgatgatgttttaactctaaccggaaactctcttcaaggctttgagtgccttgatgaaaagctgtcgtggatattgttc |
21704952 |
T |
|
| Q |
211 |
gtggatggatgttctttgttgcatatcttgga |
242 |
Q |
| |
|
||||||||||||||||| | ||||||||||| |
|
|
| T |
21704953 |
atggatggatgttctttgctccatatcttgga |
21704984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 245
Target Start/End: Original strand, 21714297 - 21714527
Alignment:
| Q |
15 |
aggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatgat |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| ||||||| | ||||| | ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
21714297 |
aggagagaagtacaaacttatgtgggcagcaaaatacatagaaaacaccagacacattccagaggatctacacaaaaagattgcagataacattgatgaa |
21714396 |
T |
|
| Q |
115 |
ctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtgg |
214 |
Q |
| |
|
||||||||||||||| | | ||||||||| ||| |||| | |||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
21714397 |
ctgaagggtcattttgacaacgatgttttagcttcaaccagttggtctcttgaaggctttggtagccttgaagaaaagctatcgtggatgttgttcgtgg |
21714496 |
T |
|
| Q |
215 |
atggatgttctttgttgcatatcttggagag |
245 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |
|
|
| T |
21714497 |
atggatgttctttgcttcatatcttggagag |
21714527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 21764172 - 21764389
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||| | | | || | || || ||| |||||||||| |||||||| || |
|
|
| T |
21764172 |
agttaggagagaagtacaagcttaagtgggcagcagaatacatagaaaacaccgcacttaatccagaggaactacaccaaaagattgctgataacatcga |
21764271 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttc |
210 |
Q |
| |
|
||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||| |||| |||||||||||| |
|
|
| T |
21764272 |
tgaactgaagggtcgttttagcgatgatgttttaactttaactggaaagtctcttgaaggctttcatagccttgaagaaaagttgtcgtggatgttgttc |
21764371 |
T |
|
| Q |
211 |
gtggatggatgttctttg |
228 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
21764372 |
gtggatggatgctctttg |
21764389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 21726008 - 21726239
Alignment:
| Q |
13 |
ttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatg |
112 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| ||||||| ||||||| | | ||||| | ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
21726008 |
ttagcagagtagtacaaacttatgtgggcagcaaaatacatagaaaacaccggacacattccagaggatctacacaaaaagattgctgataacattgatg |
21726107 |
T |
|
| Q |
113 |
atctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgt |
212 |
Q |
| |
|
| ||||||||||||||| ||| ||||||||| ||| |||| | |||||||| ||||||| ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
21726108 |
aactgaagggtcattttgacgacgatgttttagcttcaaccagatggtctcttgcaggctttcgtagccttgaagaaaagctgtcgtggatgttgttcgt |
21726207 |
T |
|
| Q |
213 |
ggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |
|
|
| T |
21726208 |
ggatggatgttctttgctgtatatcttggaga |
21726239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 21772073 - 21772304
Alignment:
| Q |
13 |
ttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatg |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| ||||||| |||| | | | ||||| | ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
21772073 |
ttagcagagaagtacaaacttatgtgggcagcaaaatacatagaaaataacggatacattccagaggatctacacaaaaagattgctgataacattgatg |
21772172 |
T |
|
| Q |
113 |
atctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgt |
212 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| |||| | |||||||| ||||||| ||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
21772173 |
aactgaagggtcattttgacgatgatgttttaacttcaaccagatggtctcttgcaggctttcgtagccttgaagaaaagttgtcgtggatgttgttcgt |
21772272 |
T |
|
| Q |
213 |
ggatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |
|
|
| T |
21772273 |
ggatggatgttctttgctgtatatcttggaga |
21772304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 21628238 - 21628468
Alignment:
| Q |
14 |
taggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattgatga |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||||| |||||| || | |||| | || || |||||||||||||| |||||||||||||| |
|
|
| T |
21628238 |
taggagagaagtacaagcttgtgtgggcatcaaaatacatagaaaacattggacttattccagaggaactacacaaaaagattgctgataacattgatga |
21628337 |
T |
|
| Q |
114 |
tctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtg |
213 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||| || || |||||| |||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
21628338 |
actgaagggtcgttttagcgacgatgttttaaatttaacgggaaactctcttcaaggctttggatgccttgaagaaaagctgtcgtggatgttgttcgtg |
21628437 |
T |
|
| Q |
214 |
gatggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
|||||||| |||||| | |||||||||||| |
|
|
| T |
21628438 |
gatggatgctctttgctttatatcttggaga |
21628468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 21664208 - 21664442
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacactgaaagcattcagaaagatctgcacaaaaagattgccgataacattga |
110 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||| |||| || | || || ||||| |||||||||||| |||||||| || |
|
|
| T |
21664208 |
agttaggagggaagtacaagcttatgtgggcagcaaaatacattgaaaatacaagactcaatccacgggatctacacaaaaagatttttgataacatcga |
21664307 |
T |
|
| Q |
111 |
tgatctgaagggtcattttagcgatgatgt---tttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttg |
207 |
Q |
| |
|
||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||| |
|
|
| T |
21664308 |
tgaactgaagggtcattttgacgatgatgtaattttaactttaaccggcaagtctcttgaaggctttggaagccttgaagaaaagctgtcgtggatattg |
21664407 |
T |
|
| Q |
208 |
ttcgtggatggatgttctttgttgcatatcttgga |
242 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||| |
|
|
| T |
21664408 |
ttcgtggatggatgctctttgctttatatcttgga |
21664442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 79 - 242
Target Start/End: Original strand, 21745710 - 21745873
Alignment:
| Q |
79 |
gatctgcacaaaaagattgccgataacattgatgatctgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggta |
178 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||||| || || |||||| ||||||||| |
|
|
| T |
21745710 |
gatctgcacaaaaagattgttgataacattgatgaactgaagggtcgttttagcgacgatgttttaactttaactggaaattctcttcaaggctttgaat |
21745809 |
T |
|
| Q |
179 |
gcctcgaagaaaagctgtcatggatgttgttcgtggatggatgttctttgttgcatatcttgga |
242 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
21745810 |
gccttgaagaaaagctgtcgtggatgttattcgtagatggatgttctttgctccatatcttgga |
21745873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 21785520 - 21785556
Alignment:
| Q |
15 |
aggagagaagtacaagcttatgtgggcagcagaatac |
51 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
21785520 |
aggagagaagtacaagcttatgtgggccgcaaaatac |
21785556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 244
Target Start/End: Original strand, 25588 - 25716
Alignment:
| Q |
116 |
tgaagggtcattttagcgatgatgttttaactttaaccggcaagtctcttgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtgga |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| |
|
|
| T |
25588 |
tgaagggtcattttagcgaggatgttttaactttaactaaaaagtctcttgaaggctttggtacccttgaagaaaagctgtcgttgatgttgttcgtgga |
25687 |
T |
|
| Q |
216 |
tggatgttctttgttgcatatcttggaga |
244 |
Q |
| |
|
||||||||||||| | ||||||||||||| |
|
|
| T |
25688 |
tggatgttctttgctacatatcttggaga |
25716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 25420 - 25472
Alignment:
| Q |
11 |
agttaggagagaagtacaagcttatgtgggcagcagaatacatcaaaaacact |
63 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
25420 |
agttaggagagaagtacaagcttaagtgggcagcagaatacatagaaaacact |
25472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 18192123 - 18192049
Alignment:
| Q |
165 |
tgaaggctttggtagcctcgaagaaaagctgtcatggatgttgttcgtggatggatgttctttgttgcatatctt |
239 |
Q |
| |
|
||||||||||| || | | ||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
18192123 |
tgaaggctttgataacttggaagaaaagctatcatggatgttgtttgtggatggatgttctttgttgcgtatctt |
18192049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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