View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_266 (Length: 262)
Name: NF9288A_low_266
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_266 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 38243750 - 38244002
Alignment:
| Q |
4 |
aatattcaactatacaaacatcattcatcatcaatttcttcttctatnnnnnnnnngtaacaaacaataaatgaaattaaagaagagaaatgagtttgat |
103 |
Q |
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| T |
38243750 |
aatattcaactataaaaacatcattcatcatcaatttcttcttctataaaaaaaaagtaacaaacaataaatgaaattaaagaagagaaatgagtttgat |
38243849 |
T |
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| Q |
104 |
gataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggcgaaaacttcatcggcggatggtccataatacgg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38243850 |
gataggaactgacgggtttttgatagaaatggaacaaggaaggaccaaggaactgtttacgcttggagaaaacttcatcggcggatggtccataatacgg |
38243949 |
T |
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| Q |
204 |
atgaggttggtgatcgaaaggcggtatctgcggcggtggcgtagtaatggttt |
256 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38243950 |
atgaggttggtgatcgaacggcggtatctgcggcggtggcgtagtaatggttt |
38244002 |
T |
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