View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9288A_low_267 (Length: 261)

Name: NF9288A_low_267
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9288A_low_267
NF9288A_low_267
[»] chr6 (1 HSPs)
chr6 (1-254)||(22082702-22082955)
[»] chr3 (3 HSPs)
chr3 (1-254)||(19768009-19768262)
chr3 (158-254)||(45456360-45456456)
chr3 (63-129)||(29199652-29199718)
[»] chr4 (1 HSPs)
chr4 (1-254)||(37617025-37617273)
[»] chr5 (1 HSPs)
chr5 (158-254)||(40164812-40164908)
[»] chr1 (2 HSPs)
chr1 (158-254)||(6921653-6921749)
chr1 (158-254)||(38238129-38238225)
[»] chr2 (1 HSPs)
chr2 (158-250)||(7827613-7827705)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 22082955 - 22082702
Alignment:
Q  1 aaatggccaaacagaaacattgaaggcataccggaagttgaagtagcagcggagnnnnnnnncttacataaacaaaacacataatgcagtataacacaca 100  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  22082955 aaatggcaaaacagaaacattgaaggcatacctgaatttgaagtagcagcggagaaaaaaaacttacataaacaaaacacataatgcagtataacacaca 22082856  T
Q  101 ctggcagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaactacgatctaaaaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082855 ctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaactacgatctaaaaa 22082756  T
Q  201 cacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22082755 cacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 22082702  T

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Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 19768262 - 19768009
Alignment:
Q  1 aaatggccaaacagaaacattgaaggcataccggaagttgaagtagcagcggagnnnnnnnncttacataaacaaaacacataatgcagtataacacaca 100  Q
    ||||||| |||||||||||||||||||| ||| ||| ||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||    
T  19768262 aaatggctaaacagaaacattgaaggcagacctgaatttgaagtagcagcagaggaaaaaaacttacataaacaaaacacataatgcagtataacacaca 19768163  T
Q  101 ctggcagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaactacgatctaaaaa 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  19768162 ctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtgttcttaattcaaatacgatctaaaaa 19768063  T
Q  201 cacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19768062 cacatcaactaccaacactatatagcaatttgaaaatgagatacataacaccat 19768009  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 45456360 - 45456456
Alignment:
Q  158 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  45456360 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 45456456  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 29199718 - 29199652
Alignment:
Q  63 cttacataaacaaaacacataatgcagtataacacacactggcagccacgaagaaaaagctccctca 129  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||    
T  29199718 cttacataaacaaaacacataatgcagcataacacacaccgacagccacgaagaaaaagctccctca 29199652  T

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Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 37617025 - 37617273
Alignment:
Q  1 aaatggccaaacagaaacattgaaggcataccggaagttgaagtagcagcggagnnnnnnnncttacataaacaaaacacataatgcagtataacacaca 100  Q
    ||||||| |||||||||||||||||||| |||     |||||||||||||||||        |||||||||||||||||||||||||||||||||||||     
T  37617025 aaatggctaaacagaaacattgaaggcagacc-----ttgaagtagcagcggaggaaaaaaacttacataaacaaaacacataatgcagtataacacacg 37617119  T
Q  101 ctggcagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaactacgatctaaaaa 200  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37617120 ctgacagccacgaagaaaaagctccctcatgtccgaacatataagcttaagtcttggacatataagcttaagtcttcttaattcaaatacgatctaaaaa 37617219  T
Q  201 cacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37617220 cacatcaactaccaacactatatagcaatttgaaaatgagatacataacaccat 37617273  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 40164908 - 40164812
Alignment:
Q  158 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  40164908 acatataaacttaagtcttcttaattcaaatacgatctaaaaacacatcaactaccaacgctatatagcaatttgaaaatgagatacataacaccat 40164812  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 6921749 - 6921653
Alignment:
Q  158 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  6921749 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 6921653  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 38238129 - 38238225
Alignment:
Q  158 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataacaccat 254  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  38238129 acatataaacttaagtattcttaattcaaatacgatctaaaaacacattaactaccaacactatatagcaatttgaaaatgagatacataacaccat 38238225  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 7827613 - 7827705
Alignment:
Q  158 acatataagcttaagtcttcttaattcaactacgatctaaaaacacatcgactaccaacactatatagcaatttgaaaatgagatacataaca 250  Q
    |||||||| |||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  7827613 acatataaacttaagtcttcttaattcaaatacaatctaaaaacatatcaactaccaacactatatagcaatttgaaaatgagatacataaca 7827705  T

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