View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_271 (Length: 261)
Name: NF9288A_low_271
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_271 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 24130246 - 24130124
Alignment:
| Q |
131 |
taagttacgaaagtaaggtgatgccgtaaaatgacacactttcattgaattta-gtgtaaagttgatttacaatgacagtatttgtccttggaatctaat |
229 |
Q |
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| T |
24130246 |
taagttacaaaagtaaggcgatgccgtaaaacgacacactttcattggatttaagtgtaaagttgatttacaatgacagtatttgtccttgaaatctaat |
24130147 |
T |
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| Q |
230 |
ttttatttctttgatatattttt |
252 |
Q |
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| T |
24130146 |
ttttatttctttgatatattttt |
24130124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 24130978 - 24130882
Alignment:
| Q |
38 |
ttgtgttgtttttcgcttgacccatgaactccccaacatgtatctaatgtccatgcacttagtatttcagttgtacttacgggaccttgcttataag |
134 |
Q |
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| T |
24130978 |
ttgtgttgtttgtcgcttgacccatgaactccccaacatgtatctaatgtccatgcacttagtatttcagttgtacttacgggaccttgtttataag |
24130882 |
T |
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