View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_273 (Length: 261)
Name: NF9288A_low_273
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_273 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 37487921 - 37487797
Alignment:
| Q |
15 |
aggggagtgagttgaaggcgaagatcatcgttgatgggaaggggtactatacaaccaactaatcctgcaattctcggaggggagatagcatcaaaattct |
114 |
Q |
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| T |
37487921 |
aggggagtgagttgaaggcgaagatcatcattgatgggaatgggtactatacaaccaactaatcctgcaattctcggaggggcaatagcatcaaaattct |
37487822 |
T |
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| Q |
115 |
gtccagtaataaaattaattaaaag |
139 |
Q |
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| T |
37487821 |
gtccagtaacaaaatcaattaaaag |
37487797 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 37487778 - 37487724
Alignment:
| Q |
161 |
gtatcacaagcaaaacatgaaattgaaagccaaacgaaaaaccgaaagcaaaatg |
215 |
Q |
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| T |
37487778 |
gtatcacaagtgaaacatgaaattgaaagccaaacgaaaaaccgaaagcaaaatg |
37487724 |
T |
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