View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9288A_low_274 (Length: 260)
Name: NF9288A_low_274
Description: NF9288A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9288A_low_274 |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 2455019 - 2454864
Alignment:
| Q |
90 |
ggtatggcaaaattgcacttatgcgccaaaccatgcactcagggcatgctgggggcggatcaaaattgcttttttccacattttaagtggaaaaccccag |
189 |
Q |
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| T |
2455019 |
ggtatggcaaaattgcacttatgcgccaaaccatgcactcggggcatgctgggggcggatcaaaattgcttttttccacattttaagtggaaaagcccag |
2454920 |
T |
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| Q |
190 |
ttttcaaatcaaacccaattgaaaacttgcctataaataacaaacatctcactcat |
245 |
Q |
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| T |
2454919 |
ttttcaaatcaaacccaattgaaaacttgcctataaataacaaacatctcactcat |
2454864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2455214 - 2455127
Alignment:
| Q |
1 |
aaatatttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttctca |
88 |
Q |
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| T |
2455214 |
aaatatttgtgaagatcatgggaagaccatatgaatgaagattcaagatgcctcgaaagatattaccaagaaatgaattatgttctca |
2455127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 25530961 - 25531037
Alignment:
| Q |
7 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttc |
85 |
Q |
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| T |
25530961 |
ttgtgaagatcttgggaagatcat--gaatgaagattcaagaggccttgtaagacattacaaagagaggaattatgttc |
25531037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 10822079 - 10822025
Alignment:
| Q |
31 |
atgaatgaagattcaagatgcctcgaaagacattacgaagaaatgaattatgttc |
85 |
Q |
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| T |
10822079 |
atgaatgaagattcaaaaggcctcaaaagacattacaaaggaaggaattatgttc |
10822025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 12747713 - 12747681
Alignment:
| Q |
196 |
aatcaaacccaattgaaaacttgcctataaata |
228 |
Q |
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| T |
12747713 |
aatccaacccaattgaaaacttgcctataaata |
12747681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 16786 - 16746
Alignment:
| Q |
31 |
atgaatgaagattcaagatgcctcgaaagacattacgaaga |
71 |
Q |
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| T |
16786 |
atgaatgaagattcaagaagcctctaaagacattacaaaga |
16746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 17661813 - 17661756
Alignment:
| Q |
7 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattac |
66 |
Q |
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| T |
17661813 |
ttgtgaagatcatgggaagac--tatgaatgacgattcaagaggcctcataagacattac |
17661756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 8445731 - 8445763
Alignment:
| Q |
34 |
aatgaagattcaagatgcctcgaaagacattac |
66 |
Q |
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| T |
8445731 |
aatgaagattcaagatgcctctaaagacattac |
8445763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 27911928 - 27911871
Alignment:
| Q |
7 |
ttgtgaagaccatgggaagaccatatgaatgaagattcaagatgcctcgaaagacattac |
66 |
Q |
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| T |
27911928 |
ttgtgaagatcttgggaagaccat--gaatgaagattcaagaggcctcagaagacattac |
27911871 |
T |
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